Department Details

Bioinformatics Centre

1)    Meshram, R.J., Goundge, M.B., Kolte, B.S. and Gacche, R.N. (2019). An in silico approach in identification of drug targets in Leishmania: A subtractive genomic and metabolic simulation analysis. Parasitology International, 69, 59-70. ISSN(print/online): 1383-5769, URL/DOI: http://dx.doi.org/10.1016/j.parint.2018.11.006
2)    Ambhore, A.N., Kamble, S.S., Kadam, S.N., Kamble, R.D., Hebade, M.J., Hese, S.V., Gaikwad, M.V., Meshram, R.J., Gacche, R.N., Dawane, B.S. (2019). Design, synthesis and in silico study of pyridine based 1, 3, 4-oxadiazole embedded hydrazinecarbothioamide derivatives as potent anti-tubercular agent. Computational Biology and Chemistry, 80, 54-65. ISSN(print/online): 1476-9271, URL/DOI: http://dx.doi.org/10.1016/j.compbiolchem.2019.03.002
3)    Meshram, R.J., Bagul, K.T., Pawnikar, S.P., Barage, S.H., Kolte, B.S., Gacche, R.N. (2019). Known compounds and new lessons: structural and electronic basis of flavonoid-based bioactivities. Journal of Biomolecular Structure and Dynamics, 1-29. ISSN(print/online): 0739-1102/1538-0254, URL/DOI: http://dx.doi.org/10.1080/07391102.2019.1597770
4)    Gawade, P., Ghosh, P. (2018). Genomics driven approach for identification of novel therapeutic targets in Salmonella enterica. Gene, 668, 211-220. ISSN(print/online): 0378-1119, URL/DOI: http://dx.doi.org/10.1016/j.gene.2018.05.058
5)    Palrecha, S., Lakade, D., Kulkarni, A., Pal, J.K., Joshi, M. (2018). Computational insights into the interaction of small molecule inhibitors with HRI kinase domain. Journal of Biomolecular Structure and Dynamics, 1-9. ISSN(print/online): 0739-1102/1538-0254, URL/DOI: http://dx.doi.org/10.1080/07391102.2018.1465850
6)    Kharche, S., Joshi, M., Sengupta, D., Chattopadhyay, A. (2018). Membrane-induced organization and dynamics of the N-terminal domain of chemokine receptor CXCR1: insights from atomistic simulations. Chemistry and Physics of Lipids, 210, 142-148. WoS Citations: 1, ISSN(print/online): 0009-3084, URL/DOI: http://doi.org/10.1016/j.chemphyslip.2017.09.003
7)    Barage, S.H., Deobagkar, D.D., Baladhye, V.B. (2018). Characterization of structural and functional role of selenocysteine in selenoprotein H and its impact on DNA binding. Amino Acids, 50 (5), 593-607. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 0939-4451/1438-2199, URL/DOI: http://dx.doi.org/10.1007/s00726-018-2543-5
8)    Hussain, K., Mungikar, K., Kulkarni, A., Kamble, A. (2018). Identification, characterization and expression analysis of pigeonpea miRNAs in response to Fusarium wilt. Gene, 653, 57-64. Google Scholar Citations: 2, WoS Citations: 1, ISSN(print/online): 0378-1119, URL/DOI: http://dx.doi.org/10.1016/j.gene.2018.02.017
9)    Lomate, P.R., Dewangan, V., Mahajan, N., Kumar, Y., Kulkarni, A., Wang, L., Saxsena, S., Gupta, V.S., Giri, A.P. (2018). Integrated transcriptomic and proteomic analyses suggest the participation of endogenous protease inhibitors in the regulation of protease gene expression in Helicoverpa armigera. Molecular and Cellular Proteomics, 17 (7), 1324-1336. ISSN(print/online): 1535-9476/1535-9484, URL/DOI: http://dx.doi.org/10.1074/mcp.RA117.000533
10)    Byukusenge, M., Nissly, R.H., Kasibhatla, S.M., Li, L., Russell, R., Springer, H., Barry, R., Van Saun, R., Wolfgang, D., Hovingh, E., Kulkarni-Kale, U., Kuchipudi, S.V. (2018). Complete Genome Sequences of Four Bovine Coronavirus Isolates from Pennsylvania. Genome Announcements, 6 (22), e00467-18. WoS Citations: 2, ISSN(print/online): 2169-8287, URL/DOI: http://dx.doi.org/10.1128/genomeA.00467-18
11)    Kolte, B.S., Londhe, S.R., Solanki, B.R., Gacche, R.N., Meshram, R.J. (2018). FilTer BaSe: A web accessible chemical database for small compound libraries. Journal of Molecular Graphics and Modelling, 80, 95-103. ISSN(print/online): 1093-3263, URL/DOI: http://dx.doi.org/10.1016/j.jmgm.2017.12.020
12)    Augustine, T., Chaudhary, P., Gupta, K., Islam, S., Ghosh, P., Santra, M.K., Mitra, D. (2017). Cyclin F/FBXO1 interacts with HIV-1 viral infectivity factor (Vif) and restricts progeny virion infectivity by ubiquitination and proteasomal degradation of vif protein through SCFcyclin F E3 ligase machinery. Journal of Biological Chemistry, 292 (13), 5349-5363. Google Scholar Citations: 2, WoS Citations: 2, ISSN(print/online): 0021-9258/1083-351X, URL/DOI: http://dx.doi.org/10.1074/jbc.M116.765842
13)    Sengupta, D., Sonar, K., Joshi, M. (2017). Characterizing clinically relevant natural variants of GPCRs using computational approaches. Methods in Cell Biology, 142, 187-204. ISSN(print/online): 0091-679X, URL/DOI: https://doi.org/10.1016/bs.mcb.2017.07.013
14)    Meshram, R.J., Baladhye, V.B., Gacche, R.N., Karale, B.K., Gaikar, R.B. (2017). Pharmacophore mapping approach for drug target identification: A chemical synthesis and in silico study on novel thiadiazole compounds. Journal of Clinical and Diagnostic Research, 11 (5), KF01-KF08. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 0973-709X, URL/DOI: http://dx.doi.org/10.7860/JCDR/2017/22761.9925
15)    Barage, S., Kulkarni, A., Pal, J.K., Joshi, M. (2017). Unravelling the structural interactions between PKR kinase domain and its small molecule inhibitors using computational approaches. Journal of Molecular Graphics and Modelling, 75, 322-329. Google Scholar Citations: 1, ISSN(print/online): 1093-3263, URL/DOI: http://dx.doi.org/10.1016/j.jmgm.2017.06.009
16)    Kadam, K., Karbhal, R., Jayaraman, V.K., Sawant, S., Kulkarni-Kale, U. (2017). AllerBase: a comprehensive allergen knowledgebase. Database: The Journal of Biological Databases and Curation, 2017, 1-12. ISSN(print/online): 1758-0463, URL/DOI: http://dx.doi.org/10.1093/database/bax066
17)    Parulekar, N.N., Kolekar, P., Jenkins, A., Kleiven, S., Utkilen, H., Johansen, A., Sawant, S., Kulkarni-Kale, U., Kale, M., Sæbø, M. (2017). Characterization of bacterial community associated with phytoplankton bloom in a eutrophic lake in South Norway using 16S rRNA gene amplicon sequence analysis. PloS One, 12 (3), e0173408. Google Scholar Citations: 17, WoS Citations: 11, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0173408
18)    Waman, V.P., Kale, M.M., Kulkarni-Kale, U. (2017). Genetic diversity and evolution of dengue virus serotype 3: A comparative genomics study. Infection, Genetics and Evolution, 49, 234-240. Google Scholar Citations: 7, WoS Citations: 3, ISSN(print/online): 1567-1348, URL/DOI: http://dx.doi.org/10.1016/j.meegid.2017.01.022
19)    Saxena, S. (2016). Grid Computing for Big Data Mining and KDD. CSI Communicatoins, 39 (8), 16-17. ISSN(print/online): 0970-647X.
20)    Panwar, H.S., Ojha, H., Ghosh, P., Raut, S., Sahu, A. (2016). Domain swapping reveals functional modularity present in the decay-accelerating factor (CD55). Immunobiology, 10 (221), 1181-1182. ISSN(print/online): 0171-2985, URL/DOI: http://dx.doi.org/10.1016/j.imbio.2016.06.128
21)    Tandale, A., Joshi, M., Sengupta, D. (2016). Structural insights and functional implications of inter-individual variability in beta(2)-adrenergic receptor. Scientific Reports, 6, 24379. Google Scholar Citations: 7, WoS Citations: 5, ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/srep24379
22)    Agrawal, S., Kulabhusan, P.K., Joshi, M., Bodas, D., Paknikar, K.M. (2016). A high affinity phage-displayed peptide as a recognition probe for the detection of Salmonella Typhimurium. Journal of Biotechnology, 231, 40-45. Google Scholar Citations: 3, WoS Citations: 3, ISSN(print/online): 0168-1656, URL/DOI: http://dx.doi.org/10.1016/j.jbiotec.2016.05.027
23)    Joshi, M., Rajpathak, S.N., Narwade, S.C., Deobagkar, D. (2016). Ensemble-Based Virtual Screening and Experimental Validation of Inhibitors Targeting a Novel Site of Human DNMT1. Chemical Biology and Drug Design, 88 (1), 5-16. Google Scholar Citations: 8, WoS Citations: 6, ISSN(print/online): 1747-0285, URL/DOI: http://dx.doi.org/10.1111/cbdd.12741
24)    Baladhye, V.B., Fawade, M.M. (2016). Affinity based proteomic profiling of yeast in response to phenobaritone. Research Journal of Pharmaceutical, Biological and Chemical Sciences, 7 (5), 94-104. ISSN(print/online): 0975-8585.
25)    Mathai, J., Mittal, S.P., Alam, A., Ranade, P., Mogare, D., Patel, S., Saxena, S., Ghorai, S., Kulkarni, A.P., Chattopadhyay, S. (2016). SMAR1 binds to T (C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster. Scientific Reports, 6, ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/srep33779
26)    Kulkarni, A.P., Mittal, S.P. (2016). Sequence data mining in search of hookworm (Necator americanus) microRNAs. Gene, 590 (2), 317-323. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 0378-1119, URL/DOI: http://dx.doi.org/10.1016/j.gene.2016.05.039
27)    Waman, V.P., Kasibhatla, S.M., Kale, M.M., Kulkarni-Kale, U. (2016). Population genomics of dengue virus serotype 4: insights into genetic structure and evolution. Archives of Virology, 161 (8), 2133-2148. Google Scholar Citations: 9, WoS Citations: 5, ISSN(print/online): 0304-8608/1432-8798, URL/DOI: http://dx.doi.org/10.1007/s00705-016-2886-8
28)    Waman, V.P., Kolekar, P., Ramtirthkar, M.R., Kale, M.M., Kulkarni-Kale, U. (2016). Analysis of genotype diversity and evolution of Dengue virus serotype 2 using complete genomes. PeerJ, (8), e2326. Google Scholar Citations: 10, WoS Citations: 4, ISSN(print/online): 2167-8359, URL/DOI: http://dx.doi.org/10.7717/peerj.2326
29)    Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2016). Erratum to: BioDB extractor: customized data extraction system for commonly used bioinformatics databases. BioData Mining, 9 (1), ISSN(print/online): 1756-0381, URL/DOI: http://dx.doi.org/10.1186/s13040-016-0081-9
30)    Kolekar, P.S., Waman, V.P., Kale, M.M., Kulkarni-Kale, U. (2016). RV-Typer: A Web Server for Typing of Rhinoviruses Using Alignment-Free Approach. PloS One, 11 (2), e0149350. Google Scholar Citations: 2, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0149350
31)    Sandhu, V., Lothe, I.B., Labori, K.J., Skrede, M.L., Hamfjord, J., Dalsgaard, A.M., Buanes, T., Dube, G., Kale, M.M., Sawant, S., Kulkarni-Kale, U. (2016). Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. Molecular Oncology, 10 (2), 303-316. Google Scholar Citations: 7, WoS Citations: 4, ISSN(print/online): 1574-7891, URL/DOI: http://dx.doi.org/10.1016/j.molonc.2015.10.011
32)    Mane, A., Vidhate, P., Kusro, C., Waman, V., Saxena, V., Kulkarni‐Kale, U., Risbud, A. (2016). Molecular mechanisms associated with Fluconazole resistance in clinical Candida albicans isolates from India. Mycoses, 59 (2), 93-100. Google Scholar Citations: 25, WoS Citations: 7, ISSN(print/online): 1439-0507, URL/DOI: http://dx.doi.org/10.1111/myc.12439
33)    Kolekar, P., Pataskar, A., Kulkarni-Kale, U., Pal, J., Kulkarni, A. (2016). IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES). Scientific Reports, 6, 27436. Google Scholar Citations: 14, WoS Citations: 12, ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/srep27436
34)    Gaikwad, P.S., Panicker, L., Mohole, M., Sawant, S., Mukhopadhyaya, R., Nath, B.B. (2016). Differential sensitivity of Chironomus and human hemoglobin to gamma radiation. Biochemical and Biophysical Research Communications, 476 (4), 371-378. Google Scholar Citations: 2, ISSN(print/online): 0006-291X, URL/DOI: http://dx.doi.org/10.1016/j.bbrc.2016.05.129
35)    Gautam, A.K., Panse, Y., Ghosh, P., Reza, M.J., Mullick, J., Sahu, A. (2015). Mutational analysis of Kaposica reveals that bridging of MG2 and CUB domains of target protein is crucial for the cofactor activity of RCA proteins. Proceedings of the National Academy of Sciences of the United States of America, 112 (41), 12794-12799. Google Scholar Citations: 6, WoS Citations: 6, ISSN(print/online): 1091-6490, URL/DOI: http://dx.doi.org/10.1073/pnas.1506449112
36)    Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2015). BioDB extractor: customized data extraction system for commonly used bioinformatics databases. BioData Mining, 8 (1), 1. Google Scholar Citations: 2, WoS Citations: 2, ISSN(print/online): 1756-0381, URL/DOI: http://dx.doi.org/10.1186/s13040-015-0067-z
37)    Banerjee, A., Benjamin, R., Balakrishnan, K., Ghosh, P., Banerjee, S. (2014). Human protein Staufen-2 promotes HIV-1 proliferation by positively regulating RNA export activity of viral protein Rev. Retrovirology, 11 (1), 1. Google Scholar Citations: 10, WoS Citations: 5, ISSN(print/online): 1742-4690, URL/DOI: http://dx.doi.org/10.1186/1742-4690-11-18
38)    Shahane, G., Parsania, C., Sengupta, D., Joshi, M. (2014). Molecular insights into the dynamics of pharmacogenetically important N-terminal variants of the human β2-adrenergic receptor. PLoS Computational Biology, 10 (12), e1004006. Google Scholar Citations: 12, WoS Citations: 9, ISSN(print/online): 1553-7358/1553-734X, URL/DOI: http://dx.doi.org/10.1371/journal.pcbi.1004006
39)    Kumbhar, V., Kharche, S., Charla, S., Baladhye, V.B., Kulkarni, A.P., Joshi, M. (2014). Unraveling the function of novel yeast proteins. Journal of Proteins and Proteomics, 5 (3), 112. ISSN(print/online): 0975-8151.
40)    Mittal, S.P., Kulkarni, A.P., Mathai, J., Chattopadhyay, S., Pal, J.K. (2014). Dose-dependent differential response of mammalian cells to cytoplasmic stress is mediated through the heme-regulated eIF2α kinase. International Journal of Biochemistry and Cell Biology, 54, 186-197. Google Scholar Citations: 6, WoS Citations: 5, ISSN(print/online): 1357-2725, URL/DOI: http://dx.doi.org/10.1016/j.biocel.2014.07.016
41)    Waman, V.P., Kolekar, P.S., Kale, M.M., Kulkarni-Kale, U. (2014). Population Structure and Evolution of Rhinoviruses. PloS One, 9 (2), e88981. Google Scholar Citations: 26, WoS Citations: 13, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0088981
42)    Kolekar, P., Hake, N., Kale, M., Kulkarni-Kale, U. (2014). WNV Typer: A server for genotyping of West Nile viruses using an alignment-free method based on a return time distribution. Journal of Virological Methods, 198, 41-55. Google Scholar Citations: 3, WoS Citations: 2, ISSN(print/online): 0166-0934, URL/DOI: http://dx.doi.org/10.1016/j.jviromet.2013.12.012
43)    Joshi, M., Kulkarni, A., Pal, J.K. (2013). Small molecule modulators of eukaryotic initiation factor 2α kinases, the key regulators of protein synthesis. Biochimie, 95 (11), 1980-1990. Google Scholar Citations: 28, WoS Citations: 19, ISSN(print/online): 0300-9084, URL/DOI: http://dx.doi.org/10.1016/j.biochi.2013.07.030
44)    Mittal, S.P., Mathai, J., Kulkarni, A.P., Pal, J.K., Chattopadhyay, S. (2013). miR-320a regulates erythroid differentiation through MAR binding protein SMAR1. International Journal of Biochemistry and Cell Biology, 45 (11), 2519-2529. Google Scholar Citations: 11, WoS Citations: 9, ISSN(print/online): 1357-2725, URL/DOI: http://dx.doi.org/10.1016/j.biocel.2013.07.006
45)    Banerji, A. (2013). An attempt to construct a (general) mathematical framework to model biological “context-dependence”. Systems and Synthetic Biology, 7 (4), 221-227. Google Scholar Citations: 4, ISSN(print/online): 1872-5325/1872-5333, URL/DOI: http://dx.doi.org/10.1007/s11693-013-9122-6
46)    Banerji, A., Navare, C. (2013). Fractal nature of protein surface roughness: a note on quantification of change of surface roughness in active sites, before and after binding. Journal of Molecular Recognition, 26 (5), 201-214. Google Scholar Citations: 8, WoS Citations: 6, ISSN(print/online): 1099-1352, URL/DOI: http://dx.doi.org/10.1002/jmr.2264
47)    Balakrishnan, L., Soman, S., Patil, Y.B., Advani, J., Thomas, J.K., Desai, D.V., Kulkarni-Kale, U., Harsha, H.C., Prasad, T.K., Raju, R., Pandey, A. (2013). IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase. Cell Communication and Adhesion, 20 (3-4), 81-86. Google Scholar Citations: 5, WoS Citations: 4, ISSN(print/online): 1541-9061/1543-5180, URL/DOI: http://dx.doi.org/10.3109/15419061.2013.791683
48)    Ponnusamy, S., Zinjarde, S., Bhargava, S., Kulkarni-Kale, U., Sawant, S., Ravikumar, A. (2013). Deciphering the inactivation of human pancreatic α-amylase, an antidiabetic target, by bisdemethoxycurcumin, a small molecule inhibitor, isolated from Curcuma longa. Natural Products Journal, 3 (1), 15-25. Google Scholar Citations: 5, ISSN(print/online): 2210-3155 /2210-3163 , URL/DOI: http://www.ingentaconnect.com/content/ben/npj/2013/00000003/00000001/art00005
49)    Yadav, A., Jayaraman, V.K., Kale, M., Kulkarni-Kale, U. (2013). Phylogenetic Clustering of Protein Sequences Using Recurrence Quantification Analysis. Advanced Science Letters, 19 (5), 1336-1339. ISSN(print/online): 1936-6612/1936-7317, URL/DOI: http://dx.doi.org/10.1166/asl.2013.4499
50)    Kolhi, S., Kolaskar, A.S. (2013). Metabolic Network Analysis: Current Status and Way Forward. Current Bioinformatics, 8 (3), 285-292. ISSN(print/online): 1574-8936 /2212-392X .
51)    Saxena, S. (2012). Using Pig on Hadoop for data analysis in Bioinformatics. International Journal of Advanced Research in Computer Science, 3 (7), 240-245. ISSN(print/online): 0976-5697, URL/DOI: https://search.proquest.com/openview/61bbed5d31088693069a25a6c9e71cd4/1?pq-origsite=gscholar&cbl=1606379
52)    Mallipeddi, P.L., Joshi, M.S., Briggs, J.M. (2012). Pharmacophore-based virtual screening to aid in the identification of unknown protein function. Chemical Biology and Drug Design, 80 (6), 828-842. Google Scholar Citations: 9, WoS Citations: 7, ISSN(print/online): 1747-0285, URL/DOI: http://dx.doi.org/10.1111/j.1747-0285.2012.01408.x
53)    Banerji, A., Magarkar, A. (2012). How happy is your web browsing? A model to quantify satisfaction of an Internet user searching for desired information. Physica A: Statistical Mechanics and its Applications, 391 (17), 4215-4224. Google Scholar Citations: 2, WoS Citations: 2, ISSN(print/online): 0378-4371, URL/DOI: http://dx.doi.org/10.1016/j.physa.2012.02.002
54)    Kulkarni-Kale, U., Waman, V., Raskar, S., Mehta, S., Saxena, S. (2012). Genome to Vaccinome: Role of Bioinformatics, Immunoinformatics & Comparative Genomics. Current Bioinformatics, 7 (4), 454-466. Google Scholar Citations: 2, ISSN(print/online): 1574-8936 /2212-392X, URL/DOI: http://dx.doi.org/10.2174/157489312803900910
55)    Radhakrishnan, A., Raju, R., Tuladhar, N., Subbannayya, T., Thomas, J.K., Goel, R., Telikicherla, D., Palapetta, S.M., Rahiman, B.A., Venkatesh, D.D., Urmila, K.-K., Harsha, H.C., Mathur, P.P., Prasad, T.S.K., Pandey, A., Shemanko, C., Chatterjee, A. (2012). A pathway map of prolactin signaling. Journal of Cell Communication and Signaling, 6 (3), 169-173. Google Scholar Citations: 22, WoS Citations: 18, ISSN(print/online): 1873-9601/1873-961X, URL/DOI: http://dx.doi.org/10.1007/s12079-012-0168-0
56)    Kolekar, P., Kale, M., Kulkarni-Kale, U. (2012). Alignment-free distance measure based on return time distribution for sequence analysis: Applications to clustering, molecular phylogeny and subtyping. Molecular Phylogenetics and Evolution, 65 (2), 510-522. Google Scholar Citations: 36, WoS Citations: 20, ISSN(print/online): 1055-7903, URL/DOI: http://dx.doi.org/10.1016/j.ympev.2012.07.003
57)    Wagholikar, K.B., Sundararajan, V., Deshpande, A.W. (2012). Modeling Paradigms for Medical Diagnostic Decision Support: A Survey and Future Directions. Journal of Medical Systems, 36 (5), 3029-3049. Google Scholar Citations: 71, WoS Citations: 38, ISSN(print/online): 1573-689X, URL/DOI: http://dx.doi.org/10.1007/s10916-011-9780-4
58)    Kolhi, S., Kolaskar, A.S. (2012). Categorization of metabolome in bacterial systems. Bioinformation, 8 (7), 309-315. Google Scholar Citations: 1, ISSN(print/online): 0973-8894/0973-2063, URL/DOI: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338974/
59)    Singh, P.P., Banerji, A. (2011). Case for an RNA–prion world: a hypothesis based on conformational diversity. Journal of Biological Physics, 37 (2), 185-188. Google Scholar Citations: 4, WoS Citations: 1, ISSN(print/online): 0092-0606/1573-0689, URL/DOI: http://dx.doi.org/10.1007/s10867-011-9219-7
60)    Banerji, A., Ghosh, I. (2011). Fractal symmetry of protein interior: what have we learned?. Cellular and Molecular Life Sciences, 68 (16), 2711-2737. Google Scholar Citations: 40, WoS Citations: 24, ISSN(print/online): 1420-682X/1420-9071, URL/DOI: http://dx.doi.org/10.1007/s00018-011-0722-6
61)    Banerji, A., Ghosh, I. (2011). Mathematical criteria to observe mesoscopic emergence of protein biochemical properties. Journal of Mathematical Chemistry, 49 (3), 643-665. Google Scholar Citations: 8, WoS Citations: 3, ISSN(print/online): 0259-9791/1572-8897, URL/DOI: http://dx.doi.org/10.1007/s10910-010-9760-9
62)    Kolaskar, A.S., Kolhi, S. (2011). Pune University Metabolic Pathway Engineering (PuMPE) Resource. Journal of Emerging Trends in Computing and Information Sciences, 2 (7), 325-331. Google Scholar Citations: 2, ISSN(print/online): 2079-8407/2218-6301, URL/DOI: http://www.cisjournal.org/journalofcomputing/archive/vol2no7/vol2no7_4.pdf
  

Publications Before 2011


63)    Kulkarni, A.P., Mittal, S.P., Devasagayam, T.P.A., Pal, J.K. (2010). Hsp90 mediates activation of the heme regulated eIF-2 kinase during oxidative stress. Indian Journal of Biochemistry and Biophysics, 47 (2), 67-74. Google Scholar Citations: 10, WoS Citations: 8, ISSN(print/online): 0301-1208/0975-0959, URL/DOI: http://nopr.niscair.res.in/bitstream/123456789/8272/1/IJBB%2047%282%29%2067-74.pdf
64)    Dey, S., Jejurikar, S., Bhattacharya, S.K., Banerji, A., Adhi, K.P., Dharmadhikari, C.V. (2010). Electrical characterization of zinc oxide/aluminum nitride thin film precursor field effect transistor structures: A conducting atomic force microscopy and density functional theoretical study. Journal of Applied Physics, 108 (9), 94510-94519. Google Scholar Citations: 1, ISSN(print/online): 0021-8979/1089-7550, URL/DOI: http://dx.doi.org/10.1063/1.3471815
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66)    Joshi, M., Ebalunode, J.O., Briggs, J.M. (2009). Computational insights into the interaction of the anthrax lethal factor with the N-terminal region of its substrates. Proteins: Structure, Function and Bioinformatics, 75 (2), 323-335. Google Scholar Citations: 10, WoS Citations: 9, ISSN(print/online): 0887-3585/1097-0134, URL/DOI: http://dx.doi.org/10.1002/prot.22241
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