Teacher Details
Abhijeet Prabhakar Kulkarni
Bioinformatics Centre
abhijeet@bioinfo.net.in
| 1) | Sadawarte, S., Kale, M., Kulkarni Kale, U., Mittal, S., Kulkarni, A.P. (2025). Decoding circadian moonlighting proteins nexus with TP53: cornerstone to understand cancer and mental health disorders. Biological Rhythm Research,
56 (11), 830-854.
ISSN(print/online): 0929-1016/1744-4179,
URL/DOI: http://dx.doi.org/10.1080/09291016.2025.2518411
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| 2) | Mulla, J.A., Palod, P.S., Bhagwat, S.A., Sonawane, A.P., Acharya, S.K., Kulkarni, A.P., Tamhane, V.A. (2025). Genomic and functional insights into the diversity of Capsicum annuum defensin gene family. 3 Biotech,
15, 95.
ISSN(print/online): 2190-572X/2190-5738,
URL/DOI: http://dx.doi.org/10.1007/s13205-025-04256-y
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| 3) | Bose, G.S., Kalakoti, G., Kulkarni, A.P., Mittal, S. (2024). AP-1/C-FOS and AP-1/FRA2 differentially regulate early and late adipogenic differentiation of mesenchymal stem cells. Journal of Cellular Biochemistry,
125 (10), e30543.
ISSN(print/online): 0730-2312/1097-4644,
URL/DOI: http://dx.doi.org/10.1002/jcb.30543
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| 4) | Gire, D., Inamdar, S., Acharya, J., Sadawarte, S., Kulkarni, A., Ghaskadbi, S. (2024). Dynamic changes in the gene expression during adipogenesis in hMSCs. Gene Reports,
34, 101860.
ISSN(print/online): 2452-0144,
URL/DOI: http://dx.doi.org/10.1016/j.genrep.2023.101860
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| 5) | Bose, G.S., Jindal, S., Landage, K.G., Jindal, A., Mahale, M.P., Kulkarni, A.P., Mittal, S. (2024). SMAR1 and p53-regulated lncRNA RP11-431M3.1 enhances HIF1A translation via miR-138 in colorectal cancer cells under oxidative stress. FEBS Journal,
291 (21), 4696-4713.
ISSN(print/online): 1742-464X/1742-4658,
URL/DOI: http://dx.doi.org/10.1111/febs.17253
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| 6) | Gawai, T., Sadawarte, S., Khandagale, K., Raj, A., Kulkarni, A., Jaiswal, D.K., Ade, A.B., Gawande, S. (2024). Phylogenetic and population genetic analyses of Thrips tabaci Lindeman (Thysanoptera: Thripidae) on Allium host in India. PeerJ,
12, e17679. Google Scholar Citations,
ISSN(print/online): 2167-8359,
URL/DOI: http://dx.doi.org/10.7717/peerj.17679
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| 7) | Yadav, S., Raazi, Z., Shivaraj, S.M., Somani, D., Prashant, R., Kulkarni, A., Kumar, R., Biradar, S., Desai, S., Kadoo, N. (2023). Whole Genome Sequencing and Comparative Genomics of Indian Isolates of Wheat Spot Blotch Pathogen Bipolaris sorokiniana Reveals Expansion of Pathogenicity Gene Clusters . Pathogens,
12 (1), 1-20.
ISSN(print/online): 2076-0817,
URL/DOI: http://dx.doi.org/10.3390/pathogens12010001
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| 8) | Gedam, P.A., Khandagale, K., Shirsat, D., Thangasamy, A., Kulkarni, O., Kulkarni, A., Barvkar, V., Mahajan, V., Gupta, A.J., Bhagat, K.P., Khade, Y.P. (2023). Elucidating the molecular responses to waterlogging stress in onion (Allium cepa L.) leaf by comparative transcriptome profiling. Frontiers in Plant Science,
14, 1150909.
ISSN(print/online): 1664-462X,
URL/DOI: http://dx.doi.org/10.3389/fpls.2023.1150909
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| 9) | Sawant, P., Kulkarni, A.P., Lavania, M. (2023). Metatranscriptomic assessment of diarrhoeic faeces reveals diverse RNA viruses in rotavirus group A infected piglets and calves from India. Frontiers in Cellular and Infection Microbiology,
13, 1258660.
ISSN(print/online): 2235-2988,
URL/DOI: http://dx.doi.org/10.3389/fcimb.2023.1258660
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| 10) | Khandagale, K., Roylawar, P., Kulkarni, O., Khambalkar, P., Ade, A., Kulkarni, A., Singh, M., Gawande, S. (2022). Comparative Transcriptome Analysis of Onion in Response to Infection by Alternaria porri (Ellis) Cifferi. Frontiers in Plant Science,
13, 857306-857306.
ISSN(print/online): 1664-462X,
URL/DOI: http://dx.doi.org/10.3389/fpls.2022.857306
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| 11) | Dar, M.S., Dholakia, B.B., Kulkarni, A.P., Oak, P.S., Shanmugam, D., Gupta, V.S., Giri, A.P. (2021). Influence of domestication on specialized metabolic pathways in fruit crops. Planta,
253 (2), 1-15.
ISSN(print/online): 0032-0935/1432-2048,
URL/DOI: http://dx.doi.org/10.1007/s00425-020-03554-4
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| 12) | Kolhe, N., Kulkarni, A., Zinjarde, S., Acharya, C. (2021). Transcriptome Response of the Tropical Marine Yeast Yarrowia lipolytica on Exposure to Uranium. Current Microbiology,
78, 2033-2043.
ISSN(print/online): 0343-8651/1432-0991,
URL/DOI: http://dx.doi.org/10.1007/s00284-021-02459-z
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| 13) | Sawant, P.M., Atre, N., Kulkarni, A., Gopalkrishna, V. (2020). Detection and molecular characterization of porcine enterovirus G15 and teschovirus from India. Pathogens and Disease,
78 (5), ftaa039.
ISSN(print/online): 2049-632X,
URL/DOI: http://dx.doi.org/10.1093/femspd/ftaa039
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| 14) | Ghodke, P., Khandagale, K., Thangasamy, A., Kulkarni, A., Narwade, N., Shirsat, D., Randive, P., Roylawar, P., Singh, I., Gawande, S.J., Mahajan, V. (2020). Comparative transcriptome analyses in contrasting onion (Allium cepa L.) genotypes for drought stress. PloS One,
15 (8), e0237457.
ISSN(print/online): 1932-6203,
URL/DOI: http://dx.doi.org/10.1371/journal.pone.0237457
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| 15) | Singh, P., Bharti, N., Singh, A.P., Tripathi, S.K., Pandey, S.P., Chauhan, A.S., Kulkarni, A., Sane, A.P. (2020). Petal abscission in fragrant roses is associated with large scale differential regulation of the abscission zone transcriptome. Scientific Reports,
10 (1), 17196.
ISSN(print/online): 2045-2322,
URL/DOI: http://dx.doi.org/10.1038/s41598-020-74144-3
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| 16) | Palrecha, S., Lakade, D., Kulkarni, A., Pal, J.K., Joshi, M. (2019). Computational insights into the interaction of small molecule inhibitors with HRI kinase domain. Journal of Biomolecular Structure and Dynamics,
37 (7), 1715-1723. Google Scholar Citations,
ISSN(print/online): 0739-1102/1538-0254,
URL/DOI: http://dx.doi.org/10.1080/07391102.2018.1465850
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| 17) | Narwade, N., Patel, S., Alam, A., Chattopadhyay, S., Mittal, S., Kulkarni, A. (2019). Mapping of scaffold/matrix attachment regions in human genome: a data mining exercise. Nucleic Acids Research,
47 (14), 7247-7261. Google Scholar Citations,
ISSN(print/online): 0305-1048/1362-4962,
URL/DOI: http://dx.doi.org/10.1093/nar/gkz562
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| 18) | Hussain, K., Mungikar, K., Kulkarni, A., Kamble, A. (2018). Identification, characterization and expression analysis of pigeonpea miRNAs in response to Fusarium wilt. Gene,
653, 57-64. Google Scholar Citations,
ISSN(print/online): 0378-1119/1879-0038,
URL/DOI: http://dx.doi.org/10.1016/j.gene.2018.02.017
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| 19) | Lomate, P.R., Dewangan, V., Mahajan, N., Kumar, Y., Kulkarni, A., Wang, L., Saxena, S., Gupta, V.S., Giri, A.P. (2018). Integrated transcriptomic and proteomic analyses suggest the participation of endogenous protease inhibitors in the regulation of protease gene expression in Helicoverpa armigera. Molecular and Cellular Proteomics,
17 (7), 1324-1336.
ISSN(print/online): 1535-9476/1535-9484,
URL/DOI: http://dx.doi.org/10.1074/mcp.RA117.000533
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| 20) | Barage, S., Kulkarni, A., Pal, J.K., Joshi, M. (2017). Unravelling the structural interactions between PKR kinase domain and its small molecule inhibitors using computational approaches. Journal of Molecular Graphics and Modelling,
75, 322-329. Google Scholar Citations,
ISSN(print/online): 1093-3263/1873-4243,
URL/DOI: http://dx.doi.org/10.1016/j.jmgm.2017.06.009
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| 21) | Kulkarni, A.P., Mittal, S.P. (2016). Sequence data mining in search of hookworm (Necator americanus) microRNAs. Gene,
590 (2), 317-323. Google Scholar Citations,
ISSN(print/online): 0378-1119/1879-0038,
URL/DOI: http://dx.doi.org/10.1016/j.gene.2016.05.039
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| 22) | Kolekar, P., Pataskar, A., Kulkarni-Kale, U., Pal, J., Kulkarni, A. (2016). IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES). Scientific Reports,
6, 27436. Google Scholar Citations,
ISSN(print/online): 2045-2322,
URL/DOI: http://dx.doi.org/10.1038/srep27436
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| 23) | Mathai, J., Mittal, S.P., Alam, A., Ranade, P., Mogare, D., Patel, S., Saxena, S., Ghorai, S., Kulkarni, A.P., Chattopadhyay, S. (2016). SMAR1 binds to T (C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster. Scientific Reports,
6, 33779.
ISSN(print/online): 2045-2322,
URL/DOI: http://dx.doi.org/10.1038/srep33779
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| 24) | Tidke, P.R., Maurya, D.K., Kulkarni, A.P., Devasagayam, T., Pal, J.K. (2016). Radiation-induced oxidative stress regulates protein synthesis by modulating the expression of heme-regulated eIF2α kinase in human K562 cells. Indian Journal of Biochemistry and Biophysics,
53 (3-4), 95-103. Google Scholar Citations,
ISSN(print/online): 0301-1208/0975-0959,
URL/DOI: http://nopr.niscpr.res.in/handle/123456789/42492
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| 25) | Mittal, S.P., Kulkarni, A.P., Mathai, J., Chattopadhyay, S., Pal, J.K. (2014). Dose-dependent differential response of mammalian cells to cytoplasmic stress is mediated through the heme-regulated eIF2α kinase. International Journal of Biochemistry and Cell Biology,
54, 186-197. Google Scholar Citations,
ISSN(print/online): 1357-2725/1878-5875,
URL/DOI: http://dx.doi.org/10.1016/j.biocel.2014.07.016
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| 26) | Kumbhar, V., Kharche, S., Charla, S., Baladhye, V.B., Kulkarni, A.P., Joshi, M. (2014). Unraveling the function of novel yeast proteins. Journal of Proteins and Proteomics,
5 (3), 112.
ISSN(print/online): 0975-8151/2524-4663.
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| 27) | Joshi, M., Kulkarni, A., Pal, J.K. (2013). Small molecule modulators of eukaryotic initiation factor 2α kinases, the key regulators of protein synthesis. Biochimie,
95 (11), 1980-1990. Google Scholar Citations,
ISSN(print/online): 0300-9084/1638-6183,
URL/DOI: http://dx.doi.org/10.1016/j.biochi.2013.07.030
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| 28) | Mittal, S.P., Mathai, J., Kulkarni, A.P., Pal, J.K., Chattopadhyay, S. (2013). miR-320a regulates erythroid differentiation through MAR binding protein SMAR1. International Journal of Biochemistry and Cell Biology,
45 (11), 2519-2529. Google Scholar Citations,
ISSN(print/online): 1357-2725/1878-5875,
URL/DOI: http://dx.doi.org/10.1016/j.biocel.2013.07.006
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Publications Before 2011 |
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| 29) | Kulkarni, A.P., Mittal, S.P., Devasagayam, T.P.A., Pal, J.K. (2010). Hsp90 mediates activation of the heme regulated eIF-2 kinase during oxidative stress. Indian Journal of Biochemistry and Biophysics,
47 (2), 67-74. Google Scholar Citations,
ISSN(print/online): 0301-1208/0975-0959,
URL/DOI: http://nopr.niscair.res.in/bitstream/123456789/8272/1/IJBB%2047%282%29%2067-74.pdf
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| 30) | Kulkarni, A.P., Mittal, S.P., Devasagayam, T.P., Pal, J.K. (2009). Oxidative stress perturbs cell proliferation in human K562 cells by modulating protein synthesis and cell cycle. Free Radical Research,
43 (11), 1090-1100. Google Scholar Citations,
ISSN(print/online): 1071-5762/1029-2470,
URL/DOI: http://dx.doi.org/10.1080/10715760903179673
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| 31) | Kulkarni, A.P., Pal, J.K., Devasagayam, T.P.A. (2008). Radiation and free radical exposure and regulation of protein synthesis by the heme-regulated eukaryotic initiation factor 2a kinase. BARC Newsletter,
297, 80-87. Google Scholar Citations,
ISSN(print/online): 0976-2108,
URL/DOI: http://barc.gov.in/publications/nl/2008/20081010.pdf
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| 32) | Salokhe, S., Sarkar, A., Kulkarni, A., Mukherjee, S., Pal, J.K. (2006). Flufenoxuron, an acylurea insect growth regulator, alters development of Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae) by modulating levels of chitin, soluble protein content, and HSP70 and p34cdc2 in the larval tissues. Pesticide Biochemistry and Physiology,
85 (2), 84-90. Google Scholar Citations,
ISSN(print/online): 0048-3575/1095-9939,
URL/DOI: http://dx.doi.org/10.1016/j.pestbp.2005.10.006
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| 33) | Sarkar, A., Kulkarni, A., Chattopadhyay, S., Mogare, D., Sharma, K.K., Singh, K., Pal, J.K. (2005). Lead-induced upregulation of the heme-regulated eukaryotic initiation factor 2α kinase is compromised by hemin in human K562 cells. Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression,
1732 (1-3), 15-22. Google Scholar Citations,
ISSN(print/online): 0167-4781,
URL/DOI: http://dx.doi.org/10.1016/j.bbaexp.2005.12.003
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