Department Details
Bioinformatics Centre
| 1) | Dasgupta, A., Tripathi, A., Mitra, A., Ghosh, P., Santra, M.K., Mitra, D. (2025). Human microRNA miR-197-3p positively regulates HIV-1 virion infectivity through its target DDX52 by stabilizing Vif protein expression. Journal of Biological Chemistry,
301 (2), 108198.
ISSN(print/online): 0021-9258/1083-351X,
URL/DOI: http://dx.doi.org/10.1016/j.jbc.2025.108198
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| 2) | Gotkhindikar, A., Chakravorty, D., Sengupta, D., Joshi, M., Assmann, S.M. (2025). Is GCR1 the GPR157 of plants?. Plant Physiology,
197 (2), 057.
ISSN(print/online): 0032-0889/1532-2548,
URL/DOI: http://dx.doi.org/10.1093/plphys/kiaf057
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| 3) | Joshi, R., Gaikwad, H., Soge, B., Alshammari, A., Albekairi, N.A., Kabra, A., Yashwante, U., Kolte, B., Lokhande, P., Meshram, R.J. (2025). Exploring pyrazolines as potential inhibitors of NSP3-macrodomain of SARS-CoV-2: synthesis and in silico analysis. Scientific Reports,
15 (1), 767.
ISSN(print/online): 2045-2322,
URL/DOI: http://dx.doi.org/10.1038/s41598-024-81711-5
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| 4) | Kamble, S.C., Ghosh, P.D. (2024). Defining omics-based biomarker signatures of metabolic dysfunction-associated steatotic liver disease (MASLD): In vitro studies. Current Opinion in Biomedical Engineering,
30, 100534.
ISSN(print/online): 2468-4511,
URL/DOI: http://dx.doi.org/10.1016/j.cobme.2024.100534
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| 5) | Singh, S., Ghosh, P., Sharma, S., Bhargava, S., Kumar, A.R. (2024). Tetrahydropalmatine from medicinal plants activates human glucokinase to regulate glucose homeostasis. Biotechnology and Applied Biochemistry,
71 (2), 295-313.
ISSN(print/online): 0885-4513/1470-8744,
URL/DOI: http://dx.doi.org/10.1002/bab.2541
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| 6) | Lokhande, K.B., Pawar, S.V., Madkaiker, S., Shrivastava, A., Venkateswara, S.K., Nawani, N., Wani, M., Ghosh, P.D., Singh, A. (2024). Screening of potential phytomolecules against MurG as drug target in nosocomial pathogen Pseudomonas aeruginosa: perceptions from computational campaign. Journal of Biomolecular Structure and Dynamics,
42 (1), 1-14.
ISSN(print/online): 0739-1102/1538-0254,
URL/DOI: http://dx.doi.org/10.1080/07391102.2023.2194005
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| 7) | Nikte, S.V., Joshi, M., Sengupta, D. (2024). State-dependent dynamics of extramembrane domains in the β2-adrenergic receptor. Proteins: Structure, Function and Bioinformatics,
92 (3), 1-12.
ISSN(print/online): 0887-3585/1097-0134,
URL/DOI: http://dx.doi.org/10.1002/prot.26613
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| 8) | Rajan, B. R. S., Joshi, M., Tillu, G. (2024). Unlocking ancient wisdom with technology – A special issue on Ayurveda and technology. Journal of Ayurveda and Integrative Medicine,
15 (3), 101020.
ISSN(print/online): 0975-9476/0976-2809,
URL/DOI: http://dx.doi.org/10.1016/j.jaim.2024.101020
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| 9) | Bose, G.S., Jindal, S., Landage, K.G., Jindal, A., Mahale, M.P., Kulkarni, A.P., Mittal, S. (2024). SMAR1 and p53-regulated lncRNA RP11-431M3.1 enhances HIF1A translation via miR-138 in colorectal cancer cells under oxidative stress. FEBS Journal,
291 (21), 4696-4713.
ISSN(print/online): 1742-464X/1742-4658,
URL/DOI: http://dx.doi.org/10.1111/febs.17253
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| 10) | Bose, G.S., Kalakoti, G., Kulkarni, A.P., Mittal, S. (2024). AP-1/C-FOS and AP-1/FRA2 differentially regulate early and late adipogenic differentiation of mesenchymal stem cells. Journal of Cellular Biochemistry,
125 (10), e30543.
ISSN(print/online): 0730-2312/1097-4644,
URL/DOI: http://dx.doi.org/10.1002/jcb.30543
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| 11) | Gire, D., Inamdar, S., Acharya, J., Sadawarte, S., Kulkarni, A., Ghaskadbi, S. (2024). Dynamic changes in the gene expression during adipogenesis in hMSCs. Genetic Resources and Crop Evolution,
34, 101860.
ISSN(print/online): 0925-9864/1573-5109,
URL/DOI: http://dx.doi.org/10.1016/j.genrep.2023.101860
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| 12) | Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2024). iCEED: Integrated customized extraction of enzyme data. Journal of Bioinformatics and Computational Biology,
22 (2), 2450005.
ISSN(print/online): 0219-7200/1757-6334,
URL/DOI: http://dx.doi.org/10.1142/s0219720024500057
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| 13) | Limaye, S., Shelke, A., Kale, M.M., Kulkarni-Kale, U., Kuchipudi, S.V. (2024). IDV Typer: An Automated Tool for Lineage Typing of Influenza D Viruses Based on Return Time Distribution. Viruses,
16 (3), 373.
ISSN(print/online): 1999-4915,
URL/DOI: http://dx.doi.org/10.3390/v16030373
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| 14) | Limaye, S., Lohar, T., Dube, H., Ramasamy, S., Kale, M., Kulkarni-Kale, U., Kuchipudi, S.V., (2024). Rapid evolution leads to extensive genetic diversification of cattle flu Influenza D virus. Communications Biology,
7, 1276.
ISSN(print/online): 2399-3642,
URL/DOI: http://dx.doi.org/10.1038/s42003-024-06954-4
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| 15) | Ballabh, D., Shaikh, S., More, R.A., Meshram, R.J. (2024). Dynamics, mechanistic and energetic evaluation of thiazole-thiadiazole compounds in flavin dependent thymidylate synthase of Mycobacterium tuberculosis. International Journal of Biological Macromolecules,
289, 138839.
ISSN(print/online): 0141-8130/1879-0003,
URL/DOI: http://dx.doi.org/10.1016/j.ijbiomac.2024.138839
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| 16) | Hublikar, M., Kadu, V., Edake, N., Raut, D., Shirame, S., Z. Ahmed, M., Makam, P., Ahmad, M.S., Meshram, R.J., Bhosale, R. (2024). Design, Synthesis, Anti-Cancer, Anti-inflammatory and In Silico Studies of 3-Substituted-2-Oxindole Derivatives. Chemistry and Biodiversity,
21 (11), e202400844.
ISSN(print/online): 1612-1872/1612-1880,
URL/DOI: http://dx.doi.org/10.1002/cbdv.202400844
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| 17) | Dahiwade, M., Vyawahare, N., Garade, P., Marathe, A., Meshram, R., Suryawanshi, M., Palake, A., Kodam, K., Ottoor, D. (2024). Biological activity and biomolecule interaction of pyridyl thiazole derivative and its copper complex. Journal of Molecular Liquids,
404, 124936.
ISSN(print/online): 0167-7322/1873-3166,
URL/DOI: http://dx.doi.org/10.1016/j.molliq.2024.124936
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| 18) | Shaikh, S.A., Pachorkar, P.Y., Meshram, R.J., Boraste, D.R., More, R.A., Chobe, S.S., Ballabh, D., Wakchaure, S.N., Labhade, S.R., Kale, R.R., Labhade, H.S. (2024). Synthesis, Biological and Molecular Docking Studies of Thiazole-Thiadiazole derivatives as potential Anti-Tuberculosis Agents. Chemistry and Biodiversity,
21 (6), e202400496.
ISSN(print/online): 1612-1872/1612-1880,
URL/DOI: http://dx.doi.org/10.1002/cbdv.202400496
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| 19) | Shaikh, S.A., Labhade, S.R., Kale, R.R., Pachorkar, P.Y., Meshram, R.J., Jain, K.S., Labhade, H.S., Bhanushali, D.D., More, R.A., Nerkar, C.K., Chobe, S.S. (2024). Thiadiazole-thiazole derivatives as potent anti-tubercular agents: Synthesis, biological evaluation, and In silico docking studies. European Journal of Medicinal Chemistry Reports,
12, 100183.
ISSN(print/online): 2772-4174,
URL/DOI: http://dx.doi.org/10.1016/j.ejmcr.2024.100183
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| 20) | Vane, V., Mokal, R., Yashwante, U., Meshram, R. J., Jadhava, S. (2024). Synthesis and In-Vitro/Silico Evaluation of Fluorinated Chalcones. Oriental Journal of Chemistry,
40 (4), 1077-1086.
ISSN(print/online): 0970-020X/2231-5039,
URL/DOI: http://dx.doi.org/10.13005/ojc/400419
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| 21) | Meshram, R., Kolte, B., Gacche, R. (2024). Reverse vaccinology approach for identification of epitopes from E1 protein as peptide vaccine against HCV: A proof of concept. Vaccine,
42 (24), 1-13.
ISSN(print/online): 0264-410X/1873-2518,
URL/DOI: http://dx.doi.org/10.1016/j.vaccine.2024.07.007
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| 22) | Jani, V., Sonavane, U., Sawant, S. (2024). Structural insights into the activation mechanism of phosphoinositide 3-kinase alpha. Computational Biology and Chemistry,
108, 1-16.
ISSN(print/online): 1476-9271/1476-928X,
URL/DOI: http://dx.doi.org/10.1016/j.compbiolchem.2023.107994
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| 23) | Saxena, A., Saxena, S. (2023). Pancreatic Cancer Data Classification with Quantum Machine Learning. Journal of Quantum Computing,
5 (1), 1-13.
ISSN(print/online): 2579-0137/2579-0145,
URL/DOI: http://dx.doi.org/10.32604/jqc.2023.044555
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| 24) | Chand, K., Barman, M.K., Ghosh, P., Mitra, D. (2023). DNAJB8 facilitates autophagic-lysosomal degradation of viral Vif protein and restricts HIV-1 virion infectivity by rescuing APOBEC3G expression in host cells. FASEB Journal,
37 (3), 1-23.
ISSN(print/online): 0892-6638/1530-6860,
URL/DOI: http://dx.doi.org/10.1096/fj.202201738R
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| 25) | Doiphode, S., Lokhande, K.B., Ghosh, P., Swamy, K.V., Nagar, S. (2023). Dual inhibition of cyclooxygenase-2 (COX-2) and 5-lipoxygenase (5-LOX) by resveratrol derivatives in cancer therapy: in silico approach. Journal of Biomolecular Structure and Dynamics,
41 (17), 8571-8586. Google Scholar Citations: 1,
ISSN(print/online): 0739-1102/1538-0254,
URL/DOI: http://dx.doi.org/10.1080/07391102.2022.2135599
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| 26) | Ballav, S., Lokhande, K.B., Yadav, R.S., Ghosh, P.D., Swamy, K.V., Basu, S. (2023). Exploring binding mode assessment of novel kaempferol, resveratrol, and quercetin derivatives with PPAR-α as potent drug candidates against canc. Molecular Diversity,
27 (6), 2867 - 2885.
ISSN(print/online): 1381-1991/1573-501X,
URL/DOI: http://dx.doi.org/10.1007/s11030-022-10587-2
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| 27) | Lokhande, K.B., Pawar, S.V., Madkaiker, S., Nawani, N., Venkateswara, S.K., Ghosh, P. (2023). High throughput virtual screening and molecular dynamics simulation analysis of phytomolecules against BfmR of Acinetobacter baumannii: anti-virulent drug development campaign. Journal of Biomolecular Structure and Dynamics,
41 (7), 2698-2712. WoS Citations: 5,
ISSN(print/online): 0739-1102/1538-0254,
URL/DOI: http://dx.doi.org/10.1080/07391102.2022.2038271
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| 28) | Joshi, M.S., Lin, S.J., Vona, B., Lau, T., Huang, K., Zaki, M.S., Aldeen, H.S., Karimiani, E.G., Rocca, C., Noureldeen, M.M., Saad, A.K., Petree, C....ed. (2023). Evaluating the association of biallelic OGDHL variants with significant phenotypic heterogeneity. . Genome Medicine,
15 (1), 102.
ISSN(print/online): 1756-994X,
URL/DOI: http://dx.doi.org/10.1186/s13073-023-01258-4
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| 29) | Gedam, P.A., Khandagale, K., Shirsat, D., Thangasamy, A., Kulkarni, O., Kulkarni, A., Barvkar, V., Mahajan, V., Gupta, A.J., Bhagat, K.P., Khade, Y.P. (2023). Elucidating the molecular responses to waterlogging stress in onion (Allium cepa L.) leaf by comparative transcriptome profiling. Frontiers in Plant Science,
14, 1150909.
ISSN(print/online): 1664-462X,
URL/DOI: http://dx.doi.org/10.3389/fpls.2023.1150909
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| 30) | Sawant, P., Kulkarni, A.P., Lavania, M. (2023). Metatranscriptomic assessment of diarrhoeic faeces reveals diverse RNA viruses in rotavirus group A infected piglets and calves from India. Frontiers in Cellular and Infection Microbiology,
13, 1258660.
ISSN(print/online): 2235-2988,
URL/DOI: http://dx.doi.org/10.3389/fcimb.2023.1258660
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| 31) | Yadav, S., Raazi, Z., Shivaraj, S.M., Somani, D., Prashant, R., Kulkarni, A., Kumar, R., Biradar, S., Desai, S., Kadoo, N. (2023). Whole Genome Sequencing and Comparative Genomics of Indian Isolates of Wheat Spot Blotch Pathogen Bipolaris sorokiniana Reveals Expansion of Pathogenicity Gene Clusters . Pathogens,
12 (1), 1-20.
ISSN(print/online): 2076-0817,
URL/DOI: http://dx.doi.org/10.3390/pathogens12010001
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| 32) | Vaidya, S.R., Kumbhar, N.S., Andhare, G.K., Pawar, N., Walimbe, A.M., Kinikar, M., Kasibhatla, S.M., Kulkarni-Kale, U. (2023). Neutralizing Antibody Response to Genotypically Diverse Measles Viruses in Clinically Suspected Measles Cases . Viruses,
15 (11), 2243.
ISSN(print/online): 1999-4915,
URL/DOI: http://dx.doi.org/10.3390/v15112243
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| 33) | Lodha, K., Wavhal, D., Bhujbal, N., Mazire, P., Bhujbal, S., Korde, A., Bagul, K., Roy, A., Meshram, R., Shinde, V. (2023). Synthesis and biological evaluation of 9-aryl-1,8-dioxo-octahydroxanthene derivatives as antileishmanial agents. Results in Chemistry,
5, 100943.
ISSN(print/online): 2211-7156,
URL/DOI: http://dx.doi.org/10.1016/j.rechem.2023.100943
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| 34) | Patil, A.M., Lagad, P.M., Soge, B., Meshram, R., Lokhande, M.N., Lokhande, P.D. (2023). Ammonium chloride mediated synthesis of 2-aryl-phthalazinone from O-formyl benzoic acid and in silico applications. ARKIVOC,
2023 (7), 1-11.
ISSN(print/online): 1551-7004/1551-7012,
URL/DOI: http://dx.doi.org/10.24820/ark.5550190.p011.972
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| 35) | Kamble, R.P., Ghosh, P., Kulkarni, A.A. (2022). Identification of α-amylase inhibitory compounds from leaves of Careya arborea Roxb. and in silico docking studies. South African Journal of Botany,
151, 493-503.
ISSN(print/online): 0254-6299/1727-9321,
URL/DOI: http://dx.doi.org/10.1016/j.sajb.2022.05.018
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| 36) | Joshi, S., Ghosh, P., Barage, S., Basu, B., Deobagkar, D.D. (2022). Genome-wide lone strand adenine methylation in Deinococcus radiodurans R1: Regulation of gene expression through DR0643-dependent adenine methylation. Microbiological Research,
257, 126964.
ISSN(print/online): 0944-5013/1618-0623,
URL/DOI: http://dx.doi.org/10.1016/j.micres.2022.126964
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| 37) | Lokhande, K.B., Ghosh, P., Nagar, S., Venkateswara Swamy, K. (2022). Novel B, C-ring truncated deguelin derivatives reveals as potential inhibitors of cyclin D1 and cyclin E using molecular docking and molecular dynamic simulation. Molecular Diversity,
26 (4), 2295–2309. WoS Citations: 3,
ISSN(print/online): 1381-1991/1573-501X,
URL/DOI: http://dx.doi.org/10.1007/s11030-021-10334-z
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| 38) | Lokhande, K.B., Banerjee, T., Swamy, K.V., Ghosh, P., Deshpande, M. (2022). An in silico scientific basis for LL-37 as a therapeutic for Covid-19. Proteins: Structure, Function and Bioinformatics,
90 (5), 1029-1043. Google Scholar Citations: 1, WoS Citations: 6,
ISSN(print/online): 0887-3585/1097-0134,
URL/DOI: http://dx.doi.org/10.1002/prot.26198
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| 39) | Paithankar, H., Tarang, G.S., Parvez, F., Marathe, A., Joshi, M., Chugh, J. (2022). Inherent conformational plasticity in dsRBDs enables interaction with topologically distinct RNAs. Biophysical Journal,
121 (6), 1038-1055. WoS Citations: 1,
ISSN(print/online): 0006-3495/1542-0086,
URL/DOI: http://dx.doi.org/10.1016/j.bpj.2022.02.005
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| 40) | Khandagale, K., Roylawar, P., Kulkarni, O., Khambalkar, P., Ade, A., Kulkarni, A., Singh, M., Gawande, S. (2022). Comparative Transcriptome Analysis of Onion in Response to Infection by Alternaria porri (Ellis) Cifferi. Frontiers in Plant Science,
13, 857306-857306.
ISSN(print/online): 1664-462X,
URL/DOI: http://dx.doi.org/10.3389/fpls.2022.857306
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| 41) | Mane, A., Kasibhatla, S.M., Vidhate, P., Saxena, V., Patil, S., Rao, A., Nirmalkar, A., Kulkarni-Kale, U., Panda, S (2022). Phylogenetic Analysis of Spread of Hepatitis C Virus Identified during HIV Outbreak Investigation, Unnao, India. Emerging infectious diseases,
28 (4), 725–733. Google Scholar Citations: 1,
ISSN(print/online): 1080-6040/1080-6059,
URL/DOI: http://dx.doi.org/10.3201/eid2804.211845
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| 42) | Hufsky, F., Abecasis, A., Agudelo R. P., Bletsa, M., Brown, K., Claus, C., Deinhardt E. S., Deng, L., Friedel, C.C., Gismondi, M.I., Kostaki, E.G., Kühnert, D., Kulkarni-Kale, U., Metzner, K.J., Meyer, I.M., Miozzi, L., Nishimura, L., Paraskevopoulou, S., Pérez C. A., Rahlff, J., Thomson, E., Tumescheit, C., van der Hoek, L., Van Espen, L., Vandamme, A. M., Zaheri, M., Zuckerman, N., Marz, M. (2022). Women in the European Virus Bioinformatics Center. Viruses,
14 (7), 1522.
ISSN(print/online): 1999-4915,
URL/DOI: http://dx.doi.org/10.3390/v14071522
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| 43) | Mane, A., Limaye, S., Patil, L., Kulkarni-Kale, U. (2022). Genetic variability in minor capsid protein (L2 gene) of human papillomavirus type 16 among Indian women. Medical Microbiology and Immunology,
211, 153-160.
ISSN(print/online): 0300-8584/1432-1831,
URL/DOI: http://dx.doi.org/10.1007/s00430-022-00739-4
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| 44) | Mane, A., Limaye, S., Patil, L., Kulkarni-Kale, U. (2022). Genetic variations in the long control region of human papillomavirus type 16 isolates from India: implications for cervical carcinogenesis. Journal of Medical Microbiology,
71 (1), 001475. WoS Citations: 2,
ISSN(print/online): 0022-2615/1473-5644,
URL/DOI: http://dx.doi.org/10.1099/jmm.0.001475
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| 45) | Lodha, K.K., Wavhal, D.S., Bhalekar, S.B., Meshram, R.J., Shinde, V.S. (2022). Exploring New Tetrahydrothienopyridine Derivatives as Platelet Agglutination Inhibitors: Synthesis, Biological Evaluation and In Silico Study. ChemistrySelect,
7 (2), 202103428.
ISSN(print/online): 2365-6549,
URL/DOI: http://dx.doi.org/10.1002/slct.202103428
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| 46) | More, N.A., Jadhao, N.L., Meshram, R.J., Tambe, P., Salve, R.A., Sabane, J.K., Sawant, S.N., Gajbhiye, V., Gajbhiye, J.M. (2022). Novel 3-fluoro-4-morpholinoaniline derivatives: Synthesis and assessment of anti-cancer activity in breast cancer cells. Journal of Molecular Structure,
1253, 132127.
ISSN(print/online): 0022-2860/1872-8014,
URL/DOI: http://dx.doi.org/10.1016/j.molstruc.2021.132127
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| 47) | Meshram, R.J., Kathwate, G.H., Gacche, R.N. (2022). Progress, evolving therapeutic/diagnostic approaches, and challenges in the management of hepatitis C virus infections. Archives of Virology,
167, 717-736. WoS Citations: 1,
ISSN(print/online): 0304-8608/1432-8798,
URL/DOI: http://dx.doi.org/10.1007/s00705-022-05375-0
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| 48) | Ghosh, P., Hajra, A. (2021). Fluorination of 2 H-Indazoles Using N-Fluorobenzenesulfonimide. The Journal of Organic Chemistry,
86 (15), 10883–10888. Google Scholar Citations: 6,
ISSN(print/online): 0022-3263/1520-6904,
URL/DOI: http://dx.doi.org/10.1021/acs.joc.1c01253
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| 49) | Joshi, S., Ujaoney, A.K., Ghosh, P., Deobagkar, D.D., Basu, B. (2021). N6-methyladenine and epigenetic immunity of Deinococcus radiodurans. Research in Microbiology,
172 (1), 103789. WoS Citations: 3,
ISSN(print/online): 0923-2508/1769-7123,
URL/DOI: http://dx.doi.org/10.1016/j.resmic.2020.10.004
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| 50) | Roy, A., Behera, S., Kumari, B., Mazire, P.H., Mandal, A., Purkait, B., Ghosh, P., Das, P., Das, P. (2021). The HIV − 1 protease inhibitor Amprenavir targets Leishmania donovani topoisomerase I and induces oxidative stress-mediated programmed cell death. Parasitology International,
82, 102287. WoS Citations: 2,
ISSN(print/online): 1383-5769/1873-0329,
URL/DOI: http://dx.doi.org/10.1016/j.parint.2021.102287
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| 51) | Nikte, S.V., Sonar, K., Tandale, A., Joshi, M., Sengupta, D. (2021). Loss of a water-mediated network results in reduced agonist affinity in a β2-adrenergic receptor clinical variant. Biochimica et Biophysica Acta- Proteins and Proteomics,
1869 (4), 140605. WoS Citations: 3,
ISSN(print/online): 1570-9639/1878-1454,
URL/DOI: http://dx.doi.org/10.1016/j.bbapap.2021.140605
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| 52) | Gujar, N., Nikte, S.V., Joshi, R.S., Joshi, M. (2021). Molecular Characterization of the β2-like Octopamine Receptor of Helicoverpa armigera. Journal of Membrane Biology,
254, 311-319. WoS Citations: 2,
ISSN(print/online): 0022-2631/1432-1424,
URL/DOI: http://dx.doi.org/10.1007/s00232-021-00172-3
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| 53) | Kulkarni, A.S., Ramesh, R., Walia, S., Sayyad, S.I., Gathalkar, G.B., Balamkundu, S., Joshi, M., Sen, A., Reddy, D.S. (2021). Identification of a Novel Series of Potent Organosilicon Mosquito Repellents. ACS Omega,
6 (46), 31236-31243.
ISSN(print/online): 2470-1343,
URL/DOI: http://dx.doi.org/10.1021/acsomega.1c04961
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| 54) | Kharche, S., Joshi, M., Chattopadhyay, A., Sengupta, D. (2021). Conformational plasticity and dynamic interactions of the N-terminal domain of the chemokine receptor CXCR1. PLoS Computational Biology,
17 (5), e1008593. Google Scholar Citations: 2, WoS Citations: 6,
ISSN(print/online): 1553-7358/1553-734X,
URL/DOI: http://dx.doi.org/10.1371/journal.pcbi.1008593
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| 55) | Borse, S., Joshi, M., Saggam, A., Bhat, V., Walia, S., Marathe, A., Sagar, S., Chavan-Gautam, P., Girme, A., Hingorani, L., Tillu, G. (2021). Ayurveda botanicals in COVID-19 management: An in silico multi-target approach. PloS One,
16 (6), e0248479. Google Scholar Citations: 9, WoS Citations: 21,
ISSN(print/online): 1932-6203,
URL/DOI: http://dx.doi.org/10.1371/journal.pone.0248479
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| 119) | Joshi, M., Rajpathak, S.N., Narwade, S.C., Deobagkar, D. (2016). Ensemble-Based Virtual Screening and Experimental Validation of Inhibitors Targeting a Novel Site of Human DNMT1. Chemical Biology and Drug Design,
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| 125) | Tidke, P.R., Maurya, D.K., Kulkarni, A.P., Devasagayam, T., Pal, J.K. (2016). Radiation-induced oxidative stress regulates protein synthesis by modulating the expression of heme-regulated eIF2α kinase in human K562 cells. Indian Journal of Biochemistry and Biophysics,
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| 126) | Mane, A., Vidhate, P., Kusro, C., Waman, V., Saxena, V., Kulkarni‐Kale, U., Risbud, A. (2016). Molecular mechanisms associated with Fluconazole resistance in clinical Candida albicans isolates from India. Mycoses,
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| 128) | Sandhu, V., Lothe, I.B., Labori, K.J., Skrede, M.L., Hamfjord, J., Dalsgaard, A.M., Buanes, T., Dube, G., Kale, M.M., Sawant, S., Kulkarni-Kale, U. (2016). Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. Molecular Oncology,
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| 129) | Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2016). Erratum to: BioDB extractor: customized data extraction system for commonly used bioinformatics databases. BioData Mining,
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| 130) | Waman, V.P., Kolekar, P., Ramtirthkar, M.R., Kale, M.M., Kulkarni-Kale, U. (2016). Analysis of genotype diversity and evolution of Dengue virus serotype 2 using complete genomes. PeerJ,
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| 132) | Kolekar, P.S., Waman, V.P., Kale, M.M., Kulkarni-Kale, U. (2016). RV-Typer: A Web Server for Typing of Rhinoviruses Using Alignment-Free Approach. PloS One,
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| 133) | Gaikwad, P.S., Panicker, L., Mohole, M., Sawant, S., Mukhopadhyaya, R., Nath, B.B. (2016). Differential sensitivity of Chironomus and human hemoglobin to gamma radiation. Biochemical and Biophysical Research Communications,
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| 134) | Gautam, A.K., Panse, Y., Ghosh, P., Reza, M.J., Mullick, J., Sahu, A. (2015). Mutational analysis of Kaposica reveals that bridging of MG2 and CUB domains of target protein is crucial for the cofactor activity of RCA proteins. Proceedings of the National Academy of Sciences of the United States of America,
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| 135) | Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2015). BioDB extractor: customized data extraction system for commonly used bioinformatics databases. BioData Mining,
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| 136) | Banerjee, A., Benjamin, R., Balakrishnan, K., Ghosh, P., Banerjee, S. (2014). Human protein Staufen-2 promotes HIV-1 proliferation by positively regulating RNA export activity of viral protein Rev. Retrovirology,
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| 137) | Shahane, G., Parsania, C., Sengupta, D., Joshi, M. (2014). Molecular insights into the dynamics of pharmacogenetically important N-terminal variants of the human β2-adrenergic receptor. PLoS Computational Biology,
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| 138) | Kumbhar, V., Kharche, S., Charla, S., Baladhye, V.B., Kulkarni, A.P., Joshi, M. (2014). Unraveling the function of novel yeast proteins. Journal of Proteins and Proteomics,
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| 139) | Mittal, S.P., Kulkarni, A.P., Mathai, J., Chattopadhyay, S., Pal, J.K. (2014). Dose-dependent differential response of mammalian cells to cytoplasmic stress is mediated through the heme-regulated eIF2α kinase. International Journal of Biochemistry and Cell Biology,
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| 140) | Waman, V.P., Kolekar, P.S., Kale, M.M., Kulkarni-Kale, U. (2014). Population Structure and Evolution of Rhinoviruses. PloS One,
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| 141) | Kolekar, P., Hake, N., Kale, M., Kulkarni-Kale, U. (2014). WNV Typer: A server for genotyping of West Nile viruses using an alignment-free method based on a return time distribution. Journal of Virological Methods,
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| 142) | Joshi, M., Kulkarni, A., Pal, J.K. (2013). Small molecule modulators of eukaryotic initiation factor 2α kinases, the key regulators of protein synthesis. Biochimie,
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| 143) | Mittal, S.P., Mathai, J., Kulkarni, A.P., Pal, J.K., Chattopadhyay, S. (2013). miR-320a regulates erythroid differentiation through MAR binding protein SMAR1. International Journal of Biochemistry and Cell Biology,
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| 144) | Banerji, A., Navare, C. (2013). Fractal nature of protein surface roughness: a note on quantification of change of surface roughness in active sites, before and after binding. Journal of Molecular Recognition,
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| 145) | Banerji, A. (2013). An attempt to construct a (general) mathematical framework to model biological “context-dependence”. Systems and Synthetic Biology,
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| 146) | Yadav, A., Jayaraman, V.K., Kale, M., Kulkarni-Kale, U. (2013). Phylogenetic Clustering of Protein Sequences Using Recurrence Quantification Analysis. Advanced Science Letters,
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| 147) | Ponnusamy, S., Zinjarde, S., Bhargava, S., Kulkarni-Kale, U., Sawant, S., Ravikumar, A. (2013). Deciphering the inactivation of human pancreatic α-amylase, an antidiabetic target, by bisdemethoxycurcumin, a small molecule inhibitor, isolated from Curcuma longa. Natural Products Journal,
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| 148) | Balakrishnan, L., Soman, S., Patil, Y.B., Advani, J., Thomas, J.K., Desai, D.V., Kulkarni-Kale, U., Harsha, H.C., Prasad, T.K., Raju, R., Pandey, A. (2013). IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase. Cell Communication and Adhesion,
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| 149) | Kolhi, S., Kolaskar, A.S. (2013). Metabolic Network Analysis: Current Status and Way Forward. Current Bioinformatics,
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| 150) | Saxena, S. (2012). Using Pig on Hadoop for data analysis in Bioinformatics. International Journal of Advanced Research in Computer Science,
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| 151) | Mallipeddi, P.L., Joshi, M.S., Briggs, J.M. (2012). Pharmacophore-based virtual screening to aid in the identification of unknown protein function. Chemical Biology and Drug Design,
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| 152) | Banerji, A., Magarkar, A. (2012). How happy is your web browsing? A model to quantify satisfaction of an Internet user searching for desired information. Physica A: Statistical Mechanics and its Applications,
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| 153) | Kulkarni-Kale, U., Waman, V., Raskar, S., Mehta, S., Saxena, S. (2012). Genome to Vaccinome: Role of Bioinformatics, Immunoinformatics & Comparative Genomics. Current Bioinformatics,
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| 154) | Kolekar, P., Kale, M., Kulkarni-Kale, U. (2012). Alignment-free distance measure based on return time distribution for sequence analysis: Applications to clustering, molecular phylogeny and subtyping. Molecular Phylogenetics and Evolution,
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| 155) | Radhakrishnan, A., Raju, R., Tuladhar, N., Subbannayya, T., Thomas, J.K., Goel, R., Telikicherla, D., Palapetta, S.M., Rahiman, B.A., Venkatesh, D.D., Kulkarni-Kale, U., Harsha, H.C., Mathur, P.P., Prasad, T.S.K., Pandey, A., Shemanko, C., Chatterjee, A. (2012). A pathway map of prolactin signaling. Journal of Cell Communication and Signaling,
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| 156) | Wagholikar, K.B., Sundararajan, V., Deshpande, A.W. (2012). Modeling Paradigms for Medical Diagnostic Decision Support: A Survey and Future Directions. Journal of Medical Systems,
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| 157) | Kolhi, S., Kolaskar, A.S. (2012). Categorization of metabolome in bacterial systems. Bioinformation,
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| 159) | Singh, P.P., Banerji, A. (2011). Case for an RNA–prion world: a hypothesis based on conformational diversity. Journal of Biological Physics,
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| 160) | Kolekar, P.S., Kale, M.M., Kulkarni-Kale, U. (2011). Genotyping of Mumps Viruses Based on the SH gene: Development of a Server using Alignment-free and alignment based methods. Immunome Research,
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| 162) | Vikhe, P.P., Gaikar, R.B., Vikhe, G.P., Meshram, R.J., Karale, B.K. (2011). Molecular Properties and Docking Studies on Chromone Pyrazolones as Potential Inhibitors of P38 Map Kinase. International Journal of Pharmacy and Pharmaceutical Sciences,
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| 164) | Kulkarni, A.P., Mittal, S.P., Devasagayam, T.P.A., Pal, J.K. (2010). Hsp90 mediates activation of the heme regulated eIF-2 kinase during oxidative stress. Indian Journal of Biochemistry and Biophysics,
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| 165) | Dey, S., Jejurikar, S., Bhattacharya, S.K., Banerji, A., Adhi, K.P., Dharmadhikari, C.V. (2010). Electrical characterization of zinc oxide/aluminum nitride thin film precursor field effect transistor structures: A conducting atomic force microscopy and density functional theoretical study. Journal of Applied Physics,
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| 167) | Joshi, M., Ebalunode, J.O., Briggs, J.M. (2009). Computational insights into the interaction of the anthrax lethal factor with the N-terminal region of its substrates. Proteins: Structure, Function and Bioinformatics,
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