Department Details

Bioinformatics Centre

1)    More, N.A., Jadhao, N.L., Meshram, R.J., Tambe, P., Salve, R.A., Sabane, J.K., Sawant, S.N., Gajbhiye, V., Gajbhiye, J.M. (2022). Novel 3-fluoro-4-morpholinoaniline derivatives: Synthesis and assessment of anti-cancer activity in breast cancer cells. Journal of Molecular Structure, 1253, 132127. ISSN(print/online): 0022-2860/1872-8014, URL/DOI: http://dx.doi.org/10.1016/j.molstruc.2021.132127
2)    Roy, A., Behera, S., Mazire, P.H., Kumari, B., Mandal, A., Purkait, B., Ghosh, P., Das, P.,Das, P. (2021). The HIV − 1 protease inhibitor Amprenavir targets Leishmania donovani topoisomerase I and induces oxidative stress-mediated programmed cell death. Parasitology International, 82, 102287. ISSN(print/online): 1383-5769/1873-0329, URL/DOI: http://dx.doi.org/10.1016/j.parint.2021.102287
3)    Lokhande, K.B., Banerjee, T., Swamy, K.V., Ghosh, P., Deshpande, M. (2021). An in silico scientific basis for LL-37 as a therapeutic for Covid-19. Proteins: Structure, Function and Bioinformatics, Google Scholar Citations: 1, ISSN(print/online): 0887-3585/1097-0134, URL/DOI: http://dx.doi.org/10.1002/prot.26198
4)    Joshi, S., Ujaoney, A.K., Ghosh, P., Deobagkar, D.D., Basu, B. (2021). N6-methyladenine and epigenetic immunity of Deinococcus radiodurans. Research in Microbiology, 172 (1), 103789. ISSN(print/online): 0923-2508, URL/DOI: http://dx.doi.org/10.1016/j.resmic.2020.10.004
5)    Lokhande, K.B., Ghosh, P., Nagar, S., Venkateswara Swamy, K. (2021). Novel B, C-ring truncated deguelin derivatives reveals as potential inhibitors of cyclin D1 and cyclin E using molecular docking and molecular dynamic simulation. Molecular Diversity, ISSN(print/online): 1381-1991/1573-501X, URL/DOI: http://dx.doi.org/10.1007/s11030-021-10334-z
6)    Kharche, S., Joshi, M., Chattopadhyay, A., Sengupta, D. (2021). Conformational plasticity and dynamic interactions of the N-terminal domain of the chemokine receptor CXCR1. PLoS Computational Biology, 17 (5), e1008593. Google Scholar Citations: 2, WoS Citations: 2, ISSN(print/online): 1553-7358/1553-734X, URL/DOI: http://dx.doi.org/10.1371/journal.pcbi.1008593
7)    Borse, S., Joshi, M., Saggam, A., Bhat, V., Walia, S., Marathe, A., Sagar, S., Chavan-Gautam, P., Girme, A., Hingorani, L., Tillu, G. (2021). Ayurveda botanicals in COVID-19 management: An in silico multi-target approach. PloS One, 16 (6), e0248479. Google Scholar Citations: 9, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0248479
8)    Joshi, M., Lin, S.J., Vona, B., Barbalho, P.G., Kaiyrzhanov, R., Maroofian, R., Petree, C., Severino, M., Stanley, V., Varshney, P., Bahena, P., Alzahrani, F. (2021). Biallelic variants in KARS1 are associated with neurodevelopmental disorders and hearing loss recapitulated by the knockout zebrafish. Genetics in Medicine, 23, 1933-1943. ISSN(print/online): 1098-3600/1530-0366, URL/DOI: http://dx.doi.org/10.1038/s41436-021-01239-1
9)    Alai, S., Gujar, N., Joshi, M., Gautam, M., Gairola, S. (2021). Pan-India novel coronavirus SARS-CoV-2 genomics and global diversity analysis in spike protein. Heliyon, 7 (3), e06564. ISSN(print/online): 2405-8440, URL/DOI: http://dx.doi.org/10.1016/j.heliyon.2021.e06564
10)    Nikte, S.V., Sonar, K., Tandale, A., Joshi, M., Sengupta, D. (2021). Loss of a water-mediated network results in reduced agonist affinity in a β2-adrenergic receptor clinical variant. Biochimica et Biophysica Acta- Proteins and Proteomics, 1869 (4), 140605. ISSN(print/online): 1570-9639, URL/DOI: http://dx.doi.org/10.1016/j.bbapap.2021.140605
11)    Gujar, N., Nikte, S.V., Joshi, R.S., Joshi, M. (2021). Molecular Characterization of the β2-like Octopamine Receptor of Helicoverpa armigera. Journal of Membrane Biology, 254, 311-319. ISSN(print/online): 0022-2631/1432-1424, URL/DOI: http://dx.doi.org/10.1007/s00232-021-00172-3
12)    Dar, M.S., Dholakia, B.B., Kulkarni, A.P., Oak, P.S., Shanmugam, D., Gupta, V.S., Giri, A.P. (2021). Influence of domestication on specialized metabolic pathways in fruit crops. Planta, 253 (2), 1-15. ISSN(print/online): 0032-0935/1432-2048, URL/DOI: http://dx.doi.org/10.1007/s00425-020-03554-4
13)    Kolhe, N., Kulkarni, A., Zinjarde, S., Acharya, C. (2021). Transcriptome Response of the Tropical Marine Yeast Yarrowia lipolytica on Exposure to Uranium. Current Microbiology, 78, 2033-2043. ISSN(print/online): 0343-8651/1432-0991, URL/DOI: http://dx.doi.org/10.1007/s00284-021-02459-z
14)    Vaidya, S.R., Kasibhatla, S.M., Kamble, M.B., Munivenkatappa, A., Kumbhar, N.S., Jayaswamy, M.M., Ramtirthkar, M.R., Kale, M.M., Kulkarni-Kale, U. (2021). Genetic and antigenic characterization of wild type rubella viruses isolated from India. Vaccine, 39 (6), ISSN(print/online): 0264-410X/1873-2518, URL/DOI: http://dx.doi.org/10.1016/j.vaccine.2020.12.063
15)    Limaye, S., Kasibhatla, S.M., Ramtirthkar, M., Kinikar, M., Kale, M.M., Kulkarni-Kale, U. (2021). Circulation and Evolution of SARS-CoV-2 in India: Let the Data Speak. Viruses, 13 (11), 2238. ISSN(print/online): 1999-4915, URL/DOI: http://dx.doi.org/10.3390/v13112238
16)    Gokavi, J., Sadawarte, S., Shelke, A., Kulkarni-Kale, U., Thakar, M., Saxena, V. (2021). Inhibition of miR-155 Promotes TGF-β Mediated Suppression of HIV Release in the Cervical Epithelial Cells . Viruses, 13 (11), 2266. ISSN(print/online): 1999-4915, URL/DOI: http://dx.doi.org/10.3390/v13112266
17)    González-Candelas, F., Shaw, M.A., Phan, T., Kulkarni-Kale, U., Paraskevis, D., Luciani, F., Kimura, H., Sironi, M. (2021). One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages. Infection, Genetics and Evolution, 92, 104869. ISSN(print/online): 1567-1348/1567-7257, URL/DOI: http://dx.doi.org/10.1016/j.meegid.2021.104869
18)    Sharbidre, A., Dhage, P., Duggal, H., Meshram, R. (2021). In silico Investigation of Tridax procumbens Phyto-Constituents Against SARS-CoV-2 Infection. Biointerface Research in Applied Chemistry, 11 (4), 12120-12148. ISSN(print/online): 2069-5837, URL/DOI: http://dx.doi.org/10.33263/BRIAC114.1212012148
19)    Sawant, A.S., Kamble, S.S., Pisal, P.M., Sawant, S.S., Hese, S.V., Bagul, K.T., Pinjari, R.V., Kamble, V.T., Meshram, R.J., Gacche, R.N. (2021). Synthesis and evaluation of N-(4-(substituted)-3-(trifluoromethyl) phenyl) isobutyramides and their N-ethyl analogous as anticancer, anti-angiogenic & antioxidant agents: In vitro and in silico analysis. Computational Biology and Chemistry, 92, 107484. ISSN(print/online): 1476-9271/1476-928X, URL/DOI: http://dx.doi.org/10.1016/j.compbiolchem.2021.107484
20)    Dandekar, P.D., Kotmale, A.S., Chavan, S.R., Kadlag, P.P., Sawant, S.V., Dhavale, D.D., RaviKumar, A. (2021). Insights into the Inhibition Mechanism of Human Pancreatic α-Amylase, a Type 2 Diabetes Target, by Dehydrodieugenol B Isolated from Ocimum tenuiflorum. ACS Omega, 6 (3), 1780-1786. ISSN(print/online): 2470-1343, URL/DOI: http://dx.doi.org/10.1021/acsomega.0c00617
21)    Trivedi, J., Ghosh, P., Mitra, D. (2020). N-p-Tosyl-L-phenylalanine chloromethyl ketone (TPCK) inhibits HIV-1 by suppressing the activity of viral protease. Biochemical and Biophysical Research Communications, 527 (1), 167-172. ISSN(print/online): 0006-291X, URL/DOI: http://dx.doi.org/10.1016/j.bbrc.2020.04.096
22)    Gawade, P., Gunjal, G., Sharma, A., Ghosh, P. (2020). Reconstruction of transcriptional regulatory networks of Fis and H-NS in Escherichia coli from genome-wide data analysis. Genomics, 112 (2), 1264-1272. ISSN(print/online): 0888-7543/1089-8646, URL/DOI: http://dx.doi.org/10.1016/j.ygeno.2019.07.013
24)    Joshi, S.R., Jagtap, S., Basu, B., Deobagkar, D.D., Ghosh, P. (2020). Construction, analysis and validation of co-expression network to understand stress adaptation in Deinococcus radiodurans R1. PloS One, 15 (6), e0234721. ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0234721
25)    Jamalpure, S., Panditrao, G., Kulabhusan, P.K., Hameed, A.S., Paknikar, K.M., Joshi, M., Rajwade, J.M. (2020). In silico studies on the interaction of phage displayed biorecognition element (TFQAFDLSPFPS) with the structural protein VP28 of white spot syndrome virus. Journal of Molecular Modeling, 26 (10), 264. ISSN(print/online): 1610-2940/0948-5023, URL/DOI: http://dx.doi.org/10.1007/s00894-020-04524-z
26)    Nikte, S., Gahankari, A., Mulla, J., Sengupta, D., Joshi, M., Tamhane, V. (2020). In vitro and in silico studies on membrane interactions of diverse Capsicum annuum flower γ-thionin peptides. Proteins: Structure, Function and Bioinformatics, 88 (1), 227-236. ISSN(print/online): 0887-3585/1097-0134, URL/DOI: http://dx.doi.org/10.1002/prot.25791
27)    Kumari, J., Bendre, A.D., Bhosale, S., Vinnakota, R., Burada, A.P., Ravelli, R., Peters, P.J., Joshi, M., Kumar, J. (2020). Structural dynamics of the GluK3-kainate receptor neurotransmitter binding domains revealed by cryo-EM. International Journal of Biological Macromolecules, 149, 1051-1058. ISSN(print/online): 0141-8130/1879-0003, URL/DOI: http://dx.doi.org/10.1016/j.ijbiomac.2020.01.282
28)    Singh, P., Bharti, N., Singh, A.P., Tripathi, S.K., Pandey, S.P., Chauhan, A.S., Kulkarni, A., Sane, A.P. (2020). Petal abscission in fragrant roses is associated with large scale differential regulation of the abscission zone transcriptome. Scientific Reports, 10 (1), 17196. ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/s41598-020-74144-3
29)    Ghodke, P., Khandagale, K., Thangasamy, A., Kulkarni, A., Narwade, N., Shirsat, D., Randive, P., Roylawar, P., Singh, I., Gawande, S.J., Mahajan, V. (2020). Comparative transcriptome analyses in contrasting onion (Allium cepa L.) genotypes for drought stress. PloS One, 15 (8), e0237457. ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0237457
30)    Sawant, P.M., Atre, N., Kulkarni, A., Gopalkrishna, V. (2020). Detection and molecular characterization of porcine enterovirus G15 and teschovirus from India. Pathogens and Disease, 78 (5), ISSN(print/online): 2049-632X, URL/DOI: http://dx.doi.org/10.1093/femspd/ftaa039
31)    Vaidya, S., Kasibhatla, S., Bhattad, D., Ramtirthkar, M., Kale, M., Raut, C., Kulkarni-Kale, U. (2020). Characterization of diversity of measles viruses in India: Genomic sequencing and comparative genomics studies. Journal of Infection, 80 (3), 301-309. ISSN(print/online): 0163-4453/1532-2742, URL/DOI: http://dx.doi.org/10.1016/j.jinf.2019.11.025
32)    Mane, A., Patil, L., Limaye, S., Nirmalkar, A., Kulkarni‐Kale, U. (2020). Characterization of major capsid protein (L1) variants of Human papillomavirus type 16 by cervical neoplastic status in Indian women: Phylogenetic and functional analysis. Journal of Medical Virology, 92 (8), 1303-1308. ISSN(print/online): 0146-6615/1096-9071, URL/DOI: http://dx.doi.org/10.1002/jmv.25675
33)    Kasibhatla, S.M., Kinikar, M., Limaye, S., Kale, M.M., Kulkarni‐Kale, U. (2020). Understanding evolution of SARS‐CoV‐2: a perspective from analysis of genetic diversity of RdRp gene. Journal of Medical Virology, 92 (10), ‏ 1932-1937. WoS Citations: 6, ISSN(print/online): 0146-6615/1096-9071, URL/DOI: http://dx.doi.org/10.1002/jmv.25909
34)    Patil, A., Duggal, H., Bagul, K.T., Kamble, S., Lokhande, P., Gacche, R., Meshram, R. (2020). Synthesis of new 3-arylaminophthalides and 3-indolyl-phthalides using ammonium chloride, evaluation of their anti-mycobacterial potential and docking study. Combinatorial Chemistry and High Throughput Screening, 23 (8), 723-739. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 1386-2073/1875-5402, URL/DOI: http://dx.doi.org/10.2174/1386207323666200422082754
35)    Meshram, R.J., Bagul, K.T., Pawnikar, S.P., Barage, S.H., Kolte, B.S., Gacche, R.N. (2020). Known compounds and new lessons: structural and electronic basis of flavonoid-based bioactivities. Journal of Biomolecular Structure and Dynamics, 38 (4), 1168-1184. Google Scholar Citations: 12, WoS Citations: 11, ISSN(print/online): 0739-1102/1538-0254, URL/DOI: http://dx.doi.org/10.1080/07391102.2019.1597770
36)    Meshram, R.J., Shirsath, A., Aouti, S., Bagul, K., Gacche, R.N. (2020). Molecular modeling and simulation study of homoserine kinase as an effective leishmanial drug target. Journal of Molecular Modeling, 26 (8), 218. ISSN(print/online): 1610-2940/0948-5023, URL/DOI: http://dx.doi.org/10.1007/s00894-020-04473-7
37)    Meshram, R.J., Bagul, K.T., Aouti, S.U., Shirsath, A.M., Duggal, H., Gacche, R.N. (2020). Modeling and simulation study to identify threonine synthase as possible drug target in Leishmania major. Molecular Diversity, 25, 1679-1700. ISSN(print/online): 1381-1991/1573-501X, URL/DOI: http://dx.doi.org/10.1007/s11030-020-10129-8
38)    Hartung, F., Patil, A., Meshram, R.J., Weber, G.F. (2020). Gene expression signatures of site-specificity in cancer metastases. Clinical and Experimental Metastasis, 37 (1), 159-171. Google Scholar Citations: 3, ISSN(print/online): 0262-0898/1573-7276, URL/DOI: http://dx.doi.org/10.1007/s10585-019-09995-w
39)    Sawant, A.S., Kamble, S.S., Pisal, P.M., Meshram, R.J., Sawant, S.S., Kamble, V.A., Kamble, V.T., Gacche, R.N. (2020). Synthesis and evaluation of a novel series of 6-bromo-1-cyclopentyl-1H-indazole-4-carboxylic acid-substituted amide derivatives as anticancer, antiangiogenic, and antioxidant agents. Medicinal Chemistry Research, 29 (1), 17-32. ISSN(print/online): 1054-2523/1554-8120, URL/DOI: http://dx.doi.org/10.1007/s00044-019-02454-x
40)    Routaray, C., Bhor, R., Bai, S., Kadam, N.S., Jagtap, S., Doshi, P.J., Sundar, S., Sawant, S., Kulkarni, M.J., Pai, K. (2020). SWATH-MS based quantitative proteomics analysis to evaluate the antileishmanial effect of Commiphora wightii “Guggul” and Amphotericin B on a clinical isolate of Leishmania donovani. Journal of Proteomics, 223, 103800. ISSN(print/online): 1874-3919/1876-7737, URL/DOI: http://dx.doi.org/10.1016/j.jprot.2020.103800
41)    De Majumdar, S., Sikri, K., Ghosh, P., Jaisinghani, N., Nandi, M., Gandotra, S., Mande, S., Tyagi, J.S. (2019). Genome analysis identifies a spontaneous nonsense mutation in ppsD leading to attenuation of virulence in laboratory-manipulated Mycobacterium tuberculosis. BMC Genomics, 20 (1), 129. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 1471-2164, URL/DOI: http://dx.doi.org/10.1186/s12864-019-5482-y
42)    Panwar, H.S., Ojha, H., Ghosh, P., Barage, S.H., Raut, S., Sahu, A. (2019). Molecular engineering of an efficient four-domain DAF-MCP chimera reveals the presence of functional modularity in RCA proteins. Proceedings of the National Academy of Sciences of the United States of America, 116 (20), 9953-9958. ISSN(print/online): 1091-6490, URL/DOI: http://dx.doi.org/10.1073/pnas.1818573116
43)    Ojha, H., Ghosh, P., Panwar, H.S., Shende, R., Gondane, A., Mande, S.C., Sahu, A. (2019). Spatially conserved motifs in complement control protein domains determine functionality in regulators of complement activation-family proteins. Communications Biology, 2 (1), 290. ISSN(print/online): 2399-3642, URL/DOI: http://dx.doi.org/10.1038/s42003-019-0529-9
44)    Narwade, N., Patel, S., Alam, A., Chattopadhyay, S., Mittal, S., Kulkarni, A. (2019). Mapping of scaffold/matrix attachment regions in human genome: a data mining exercise. Nucleic Acids Research, 47 (14), 7247-7261. Google Scholar Citations: 10, WoS Citations: 7, ISSN(print/online): 0305-1048/1362-4962, URL/DOI: http://dx.doi.org/10.1093/nar/gkz562
45)    Kolte, B.S., Londhe, S.R., Bagul, K.T., Pawnikar, S.P., Goundge, M.B., Gacche, R.N., Meshram, R.J. (2019). FlavoDb: a web-based chemical repository of flavonoid compounds. 3 Biotech, 9 (11), 431. ISSN(print/online): 2190-572X/2190-5738, URL/DOI: http://dx.doi.org/10.1007/s13205-019-1962-7
46)    Ambhore, A.N., Kamble, S.S., Kadam, S.N., Kamble, R.D., Hebade, M.J., Hese, S.V., Gaikwad, M.V., Meshram, R.J., Gacche, R.N., Dawane, B.S. (2019). Design, synthesis and in silico study of pyridine based 1, 3, 4-oxadiazole embedded hydrazinecarbothioamide derivatives as potent anti-tubercular agent. Computational Biology and Chemistry, 80, 54-65. ISSN(print/online): 1476-9271/1476-928X, URL/DOI: http://dx.doi.org/10.1016/j.compbiolchem.2019.03.002
47)    Meshram, R.J., Goundge, M.B., Kolte, B.S., Gacche, R.N. (2019). An in silico approach in identification of drug targets in Leishmania: A subtractive genomic and metabolic simulation analysis. Parasitology International, 69, 59-70. ISSN(print/online): 1383-5769/1873-0329, URL/DOI: http://dx.doi.org/10.1016/j.parint.2018.11.006
49)    Tembe, S., Ghosh, P., Sukhi, S. (2018). Influence of methylation on the bacterial efflux pump-inducing property of triclosan. Journal of Hospital Infection, 98 (2), 172-174. Google Scholar Citations: 1, ISSN(print/online): 0195-6701, URL/DOI: http://dx.doi.org/10.1016/j.jhin.2017.07.009
50)    Gawade, P., Ghosh, P. (2018). Genomics driven approach for identification of novel therapeutic targets in Salmonella enterica. Gene, 668, 211-220. ISSN(print/online): 0378-1119/1879-0038, URL/DOI: http://dx.doi.org/10.1016/j.gene.2018.05.058
51)    Kharche, S., Joshi, M., Sengupta, D., Chattopadhyay, A. (2018). Membrane-induced organization and dynamics of the N-terminal domain of chemokine receptor CXCR1: insights from atomistic simulations. Chemistry and Physics of Lipids, 210, 142-148. WoS Citations: 1, ISSN(print/online): 0009-3084/1873-2941, URL/DOI: http://dx.doi.org/10.1016/j.chemphyslip.2017.09.003
52)    Barage, S.H., Deobagkar, D.D., Baladhye, V.B. (2018). Characterization of structural and functional role of selenocysteine in selenoprotein H and its impact on DNA binding. Amino Acids, 50 (5), 593-607. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 0939-4451/1438-2199, URL/DOI: http://dx.doi.org/10.1007/s00726-018-2543-5
53)    Lomate, P.R., Dewangan, V., Mahajan, N., Kumar, Y., Kulkarni, A., Wang, L., Saxsena, S., Gupta, V.S., Giri, A.P. (2018). Integrated transcriptomic and proteomic analyses suggest the participation of endogenous protease inhibitors in the regulation of protease gene expression in Helicoverpa armigera. Molecular and Cellular Proteomics, 17 (7), 1324-1336. ISSN(print/online): 1535-9476/1535-9484, URL/DOI: http://dx.doi.org/10.1074/mcp.RA117.000533
54)    Hussain, K., Mungikar, K., Kulkarni, A., Kamble, A. (2018). Identification, characterization and expression analysis of pigeonpea miRNAs in response to Fusarium wilt. Gene, 653, 57-64. Google Scholar Citations: 2, WoS Citations: 1, ISSN(print/online): 0378-1119/1879-0038, URL/DOI: http://dx.doi.org/10.1016/j.gene.2018.02.017
55)    Palrecha, S., Lakade, D., Kulkarni, A., Pal, J.K., Joshi, M. (2018). Computational insights into the interaction of small molecule inhibitors with HRI kinase domain. Journal of Biomolecular Structure and Dynamics, 37 (7), 1715-1723. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 0739-1102/1538-0254, URL/DOI: http://dx.doi.org/10.1080/07391102.2018.1465850
56)    Byukusenge, M., Nissly, R.H., Kasibhatla, S.M., Li, L., Russell, R., Springer, H., Barry, R., Van Saun, R., Wolfgang, D., Hovingh, E., Kulkarni-Kale, U., Kuchipudi, S.V. (2018). Complete Genome Sequences of Four Bovine Coronavirus Isolates from Pennsylvania. Genome Announcements, 6 (22), e00467-18. WoS Citations: 2, ISSN(print/online): 2169-8287, URL/DOI: http://dx.doi.org/10.1128/genomeA.00467-18
57)    Kolte, B.S., Londhe, S.R., Solanki, B.R., Gacche, R.N., Meshram, R.J. (2018). FilTer BaSe: A web accessible chemical database for small compound libraries. Journal of Molecular Graphics and Modelling, 80, 95-103. ISSN(print/online): 1093-3263, URL/DOI: http://dx.doi.org/10.1016/j.jmgm.2017.12.020
58)    Meshram, R.J., Dangre, A.M., Gacche, R.N. (2018). In silico Modeling and Drug Interaction Analysis of Molecular Structure of Ecto-Domain of E1 Glycoprotein of HCV. International Journal of Proteomics and Bioinformatics, 3 (1), 1-6. ISSN(print/online): 2687-9719, URL/DOI: https://www.scireslit.com/Proteomics/IJPB-ID18.pdf
59)    Augustine, T., Chaudhary, P., Gupta, K., Islam, S., Ghosh, P., Santra, M.K., Mitra, D. (2017). Cyclin F/FBXO1 interacts with HIV-1 viral infectivity factor (Vif) and restricts progeny virion infectivity by ubiquitination and proteasomal degradation of vif protein through SCFcyclin F E3 ligase machinery. Journal of Biological Chemistry, 292 (13), 5349-5363. Google Scholar Citations: 2, WoS Citations: 2, ISSN(print/online): 0021-9258/1083-351X, URL/DOI: http://dx.doi.org/10.1074/jbc.M116.765842
60)    Sengupta, D., Sonar, K., Joshi, M. (2017). Characterizing clinically relevant natural variants of GPCRs using computational approaches. Methods in Cell Biology, 142, 187-204. ISSN(print/online): 0091-679X, URL/DOI: http://dx.doi.org/10.1016/bs.mcb.2017.07.013
61)    Meshram, R.J., Baladhye, V.B., Gacche, R.N., Karale, B.K., Gaikar, R.B. (2017). Pharmacophore mapping approach for drug target identification: A chemical synthesis and in silico study on novel thiadiazole compounds. Journal of Clinical and Diagnostic Research, 11 (5), KF01-KF08. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 2249-782X/0973-709X, URL/DOI: http://dx.doi.org/10.7860/JCDR/2017/22761.9925
62)    Barage, S., Kulkarni, A., Pal, J.K., Joshi, M. (2017). Unravelling the structural interactions between PKR kinase domain and its small molecule inhibitors using computational approaches. Journal of Molecular Graphics and Modelling, 75, 322-329. Google Scholar Citations: 1, ISSN(print/online): 1093-3263, URL/DOI: http://dx.doi.org/10.1016/j.jmgm.2017.06.009
63)    Parulekar, N.N., Kolekar, P., Jenkins, A., Kleiven, S., Utkilen, H., Johansen, A., Sawant, S., Kulkarni-Kale, U., Kale, M., Sæbø, M. (2017). Characterization of bacterial community associated with phytoplankton bloom in a eutrophic lake in South Norway using 16S rRNA gene amplicon sequence analysis. PloS One, 12 (3), e0173408. Google Scholar Citations: 17, WoS Citations: 11, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0173408
64)    Kadam, K., Karbhal, R., Jayaraman, V.K., Sawant, S., Kulkarni-Kale, U. (2017). AllerBase: a comprehensive allergen knowledgebase. Database: The Journal of Biological Databases and Curation, 2017, 1-12. ISSN(print/online): 1758-0463, URL/DOI: http://dx.doi.org/10.1093/database/bax066
65)    Waman, V.P., Kale, M.M., Kulkarni-Kale, U. (2017). Genetic diversity and evolution of dengue virus serotype 3: A comparative genomics study. Infection, Genetics and Evolution, 49, 234-240. Google Scholar Citations: 7, WoS Citations: 3, ISSN(print/online): 1567-1348/1567-7257, URL/DOI: http://dx.doi.org/10.1016/j.meegid.2017.01.022
66)    Saxena, S. (2016). Grid Computing for Big Data Mining and KDD. CSI Communicatoins, 39 (8), 16-17. ISSN(print/online): 0970-647X.
67)    Panwar, H.S., Ojha, H., Ghosh, P., Raut, S., Sahu, A. (2016). Domain swapping reveals functional modularity present in the decay-accelerating factor (CD55). Immunobiology, 10 (221), 1181-1182. ISSN(print/online): 0171-2985/1878-3279, URL/DOI: http://dx.doi.org/10.1016/j.imbio.2016.06.128
68)    Agrawal, S., Kulabhusan, P.K., Joshi, M., Bodas, D., Paknikar, K.M. (2016). A high affinity phage-displayed peptide as a recognition probe for the detection of Salmonella Typhimurium. Journal of Biotechnology, 231, 40-45. Google Scholar Citations: 3, WoS Citations: 3, ISSN(print/online): 0168-1656/1873-4863, URL/DOI: http://dx.doi.org/10.1016/j.jbiotec.2016.05.027
69)    Joshi, M., Rajpathak, S.N., Narwade, S.C., Deobagkar, D. (2016). Ensemble-Based Virtual Screening and Experimental Validation of Inhibitors Targeting a Novel Site of Human DNMT1. Chemical Biology and Drug Design, 88 (1), 5-16. Google Scholar Citations: 8, WoS Citations: 6, ISSN(print/online): 1747-0277/1747-0285, URL/DOI: http://dx.doi.org/10.1111/cbdd.12741
70)    Tandale, A., Joshi, M., Sengupta, D. (2016). Structural insights and functional implications of inter-individual variability in beta(2)-adrenergic receptor. Scientific Reports, 6, 24379. Google Scholar Citations: 7, WoS Citations: 5, ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/srep24379
71)    Baladhye, V.B., Fawade, M.M. (2016). Affinity based proteomic profiling of yeast in response to phenobaritone. Research Journal of Pharmaceutical, Biological and Chemical Sciences, 7 (5), 94-104. ISSN(print/online): 0975-8585.
72)    Mathai, J., Mittal, S.P., Alam, A., Ranade, P., Mogare, D., Patel, S., Saxena, S., Ghorai, S., Kulkarni, A.P., Chattopadhyay, S. (2016). SMAR1 binds to T (C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster. Scientific Reports, 6, ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/srep33779
73)    Kulkarni, A.P., Mittal, S.P. (2016). Sequence data mining in search of hookworm (Necator americanus) microRNAs. Gene, 590 (2), 317-323. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 0378-1119/1879-0038, URL/DOI: http://dx.doi.org/10.1016/j.gene.2016.05.039
74)    Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2016). Erratum to: BioDB extractor: customized data extraction system for commonly used bioinformatics databases. BioData Mining, 9 (1), ISSN(print/online): 1756-0381, URL/DOI: http://dx.doi.org/10.1186/s13040-016-0081-9
75)    Sandhu, V., Lothe, I.B., Labori, K.J., Skrede, M.L., Hamfjord, J., Dalsgaard, A.M., Buanes, T., Dube, G., Kale, M.M., Sawant, S., Kulkarni-Kale, U. (2016). Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. Molecular Oncology, 10 (2), 303-316. Google Scholar Citations: 7, WoS Citations: 4, ISSN(print/online): 1574-7891/1878-0261, URL/DOI: http://dx.doi.org/10.1016/j.molonc.2015.10.011
76)    Waman, V.P., Kolekar, P., Ramtirthkar, M.R., Kale, M.M., Kulkarni-Kale, U. (2016). Analysis of genotype diversity and evolution of Dengue virus serotype 2 using complete genomes. PeerJ, 4, e2326. Google Scholar Citations: 45, WoS Citations: 32, ISSN(print/online): 2167-8359, URL/DOI: http://dx.doi.org/10.7717/peerj.2326
77)    Waman, V.P., Kasibhatla, S.M., Kale, M.M., Kulkarni-Kale, U. (2016). Population genomics of dengue virus serotype 4: insights into genetic structure and evolution. Archives of Virology, 161 (8), 2133-2148. Google Scholar Citations: 9, WoS Citations: 5, ISSN(print/online): 0304-8608/1432-8798, URL/DOI: http://dx.doi.org/10.1007/s00705-016-2886-8
78)    Kolekar, P.S., Waman, V.P., Kale, M.M., Kulkarni-Kale, U. (2016). RV-Typer: A Web Server for Typing of Rhinoviruses Using Alignment-Free Approach. PloS One, 11 (2), e0149350. Google Scholar Citations: 2, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0149350
79)    Kolekar, P., Pataskar, A., Kulkarni-Kale, U., Pal, J., Kulkarni, A. (2016). IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES). Scientific Reports, 6, 27436. Google Scholar Citations: 14, WoS Citations: 12, ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/srep27436
80)    Mane, A., Vidhate, P., Kusro, C., Waman, V., Saxena, V., Kulkarni‐Kale, U., Risbud, A. (2016). Molecular mechanisms associated with Fluconazole resistance in clinical Candida albicans isolates from India. Mycoses, 59 (2), 93-100. Google Scholar Citations: 25, WoS Citations: 7, ISSN(print/online): 1439-0507, URL/DOI: http://dx.doi.org/10.1111/myc.12439
81)    Gaikwad, P.S., Panicker, L., Mohole, M., Sawant, S., Mukhopadhyaya, R., Nath, B.B. (2016). Differential sensitivity of Chironomus and human hemoglobin to gamma radiation. Biochemical and Biophysical Research Communications, 476 (4), 371-378. Google Scholar Citations: 2, ISSN(print/online): 0006-291X, URL/DOI: http://dx.doi.org/10.1016/j.bbrc.2016.05.129
82)    Gautam, A.K., Panse, Y., Ghosh, P., Reza, M.J., Mullick, J., Sahu, A. (2015). Mutational analysis of Kaposica reveals that bridging of MG2 and CUB domains of target protein is crucial for the cofactor activity of RCA proteins. Proceedings of the National Academy of Sciences of the United States of America, 112 (41), 12794-12799. Google Scholar Citations: 6, WoS Citations: 6, ISSN(print/online): 1091-6490, URL/DOI: http://dx.doi.org/10.1073/pnas.1506449112
83)    Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2015). BioDB extractor: customized data extraction system for commonly used bioinformatics databases. BioData Mining, 8 (1), 1. Google Scholar Citations: 2, WoS Citations: 2, ISSN(print/online): 1756-0381, URL/DOI: http://dx.doi.org/10.1186/s13040-015-0067-z
84)    Banerjee, A., Benjamin, R., Balakrishnan, K., Ghosh, P., Banerjee, S. (2014). Human protein Staufen-2 promotes HIV-1 proliferation by positively regulating RNA export activity of viral protein Rev. Retrovirology, 11 (1), 1. Google Scholar Citations: 10, WoS Citations: 5, ISSN(print/online): 1742-4690, URL/DOI: http://dx.doi.org/10.1186/1742-4690-11-18
85)    Shahane, G., Parsania, C., Sengupta, D., Joshi, M. (2014). Molecular insights into the dynamics of pharmacogenetically important N-terminal variants of the human β2-adrenergic receptor. PLoS Computational Biology, 10 (12), e1004006. Google Scholar Citations: 12, WoS Citations: 9, ISSN(print/online): 1553-7358/1553-734X, URL/DOI: http://dx.doi.org/10.1371/journal.pcbi.1004006
86)    Mittal, S.P., Kulkarni, A.P., Mathai, J., Chattopadhyay, S., Pal, J.K. (2014). Dose-dependent differential response of mammalian cells to cytoplasmic stress is mediated through the heme-regulated eIF2α kinase. International Journal of Biochemistry and Cell Biology, 54, 186-197. Google Scholar Citations: 6, WoS Citations: 5, ISSN(print/online): 1357-2725/1878-5875, URL/DOI: http://dx.doi.org/10.1016/j.biocel.2014.07.016
87)    Kumbhar, V., Kharche, S., Charla, S., Baladhye, V.B., Kulkarni, A.P., Joshi, M. (2014). Unraveling the function of novel yeast proteins. Journal of Proteins and Proteomics, 5 (3), 112. ISSN(print/online): 0975-8151/2524-4663.
88)    Waman, V.P., Kolekar, P.S., Kale, M.M., Kulkarni-Kale, U. (2014). Population Structure and Evolution of Rhinoviruses. PloS One, 9 (2), e88981. Google Scholar Citations: 26, WoS Citations: 13, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0088981
89)    Kolekar, P., Hake, N., Kale, M., Kulkarni-Kale, U. (2014). WNV Typer: A server for genotyping of West Nile viruses using an alignment-free method based on a return time distribution. Journal of Virological Methods, 198, 41-55. Google Scholar Citations: 3, WoS Citations: 2, ISSN(print/online): 0166-0934/1879-0984, URL/DOI: http://dx.doi.org/10.1016/j.jviromet.2013.12.012
90)    Joshi, M., Kulkarni, A., Pal, J.K. (2013). Small molecule modulators of eukaryotic initiation factor 2α kinases, the key regulators of protein synthesis. Biochimie, 95 (11), 1980-1990. Google Scholar Citations: 28, WoS Citations: 19, ISSN(print/online): 0300-9084/1638-6183, URL/DOI: http://dx.doi.org/10.1016/j.biochi.2013.07.030
91)    Mittal, S.P., Mathai, J., Kulkarni, A.P., Pal, J.K., Chattopadhyay, S. (2013). miR-320a regulates erythroid differentiation through MAR binding protein SMAR1. International Journal of Biochemistry and Cell Biology, 45 (11), 2519-2529. Google Scholar Citations: 11, WoS Citations: 9, ISSN(print/online): 1357-2725/1878-5875, URL/DOI: http://dx.doi.org/10.1016/j.biocel.2013.07.006
92)    Banerji, A., Navare, C. (2013). Fractal nature of protein surface roughness: a note on quantification of change of surface roughness in active sites, before and after binding. Journal of Molecular Recognition, 26 (5), 201-214. Google Scholar Citations: 8, WoS Citations: 6, ISSN(print/online): 0952-3499/1099-1352, URL/DOI: http://dx.doi.org/10.1002/jmr.2264
93)    Banerji, A. (2013). An attempt to construct a (general) mathematical framework to model biological “context-dependence”. Systems and Synthetic Biology, 7 (4), 221-227. Google Scholar Citations: 4, ISSN(print/online): 1872-5325/1872-5333, URL/DOI: http://dx.doi.org/10.1007/s11693-013-9122-6
94)    Yadav, A., Jayaraman, V.K., Kale, M., Kulkarni-Kale, U. (2013). Phylogenetic Clustering of Protein Sequences Using Recurrence Quantification Analysis. Advanced Science Letters, 19 (5), 1336-1339. ISSN(print/online): 1936-6612/1936-7317, URL/DOI: http://dx.doi.org/10.1166/asl.2013.4499
95)    Ponnusamy, S., Zinjarde, S., Bhargava, S., Kulkarni-Kale, U., Sawant, S., Ravikumar, A. (2013). Deciphering the inactivation of human pancreatic α-amylase, an antidiabetic target, by bisdemethoxycurcumin, a small molecule inhibitor, isolated from Curcuma longa. Natural Products Journal, 3 (1), 15-25. Google Scholar Citations: 5, ISSN(print/online): 2210-3155 /2210-3163 , URL/DOI: http://dx.doi.org/10.2174/2210315511303010005
96)    Balakrishnan, L., Soman, S., Patil, Y.B., Advani, J., Thomas, J.K., Desai, D.V., Kulkarni-Kale, U., Harsha, H.C., Prasad, T.K., Raju, R., Pandey, A. (2013). IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase. Cell Communication and Adhesion, 20 (3-4), 81-86. Google Scholar Citations: 5, WoS Citations: 4, ISSN(print/online): 1541-9061/1543-5180, URL/DOI: http://dx.doi.org/10.3109/15419061.2013.791683
97)    Kolhi, S., Kolaskar, A.S. (2013). Metabolic Network Analysis: Current Status and Way Forward. Current Bioinformatics, 8 (3), 285-292. ISSN(print/online): 1574-8936/2212-392X, URL/DOI: http://dx.doi.org/10.2174/1574893611308030003
98)    Saxena, S. (2012). Using Pig on Hadoop for data analysis in Bioinformatics. International Journal of Advanced Research in Computer Science, 3 (7), 240-245. ISSN(print/online): 0976-5697, URL/DOI: https://search.proquest.com/openview/61bbed5d31088693069a25a6c9e71cd4/1?pq-origsite=gscholar&cbl=1606379
99)    Mallipeddi, P.L., Joshi, M.S., Briggs, J.M. (2012). Pharmacophore-based virtual screening to aid in the identification of unknown protein function. Chemical Biology and Drug Design, 80 (6), 828-842. Google Scholar Citations: 9, WoS Citations: 7, ISSN(print/online): 1747-0277/1747-0285, URL/DOI: http://dx.doi.org/10.1111/j.1747-0285.2012.01408.x
100)    Banerji, A., Magarkar, A. (2012). How happy is your web browsing? A model to quantify satisfaction of an Internet user searching for desired information. Physica A: Statistical Mechanics and its Applications, 391 (17), 4215-4224. Google Scholar Citations: 2, WoS Citations: 2, ISSN(print/online): 0378-4371/1873-2119, URL/DOI: http://dx.doi.org/10.1016/j.physa.2012.02.002
101)    Kulkarni-Kale, U., Waman, V., Raskar, S., Mehta, S., Saxena, S. (2012). Genome to Vaccinome: Role of Bioinformatics, Immunoinformatics & Comparative Genomics. Current Bioinformatics, 7 (4), 454-466. Google Scholar Citations: 2, ISSN(print/online): 1574-8936/2212-392X, URL/DOI: http://dx.doi.org/10.2174/157489312803900910
102)    Kolekar, P., Kale, M., Kulkarni-Kale, U. (2012). Alignment-free distance measure based on return time distribution for sequence analysis: Applications to clustering, molecular phylogeny and subtyping. Molecular Phylogenetics and Evolution, 65 (2), 510-522. Google Scholar Citations: 36, WoS Citations: 20, ISSN(print/online): 1055-7903/1095-9513, URL/DOI: http://dx.doi.org/10.1016/j.ympev.2012.07.003
103)    Radhakrishnan, A., Raju, R., Tuladhar, N., Subbannayya, T., Thomas, J.K., Goel, R., Telikicherla, D., Palapetta, S.M., Rahiman, B.A., Venkatesh, D.D., Urmila, K.-K., Harsha, H.C., Mathur, P.P., Prasad, T.S.K., Pandey, A., Shemanko, C., Chatterjee, A. (2012). A pathway map of prolactin signaling. Journal of Cell Communication and Signaling, 6 (3), 169-173. Google Scholar Citations: 22, WoS Citations: 18, ISSN(print/online): 1873-9601/1873-961X, URL/DOI: http://dx.doi.org/10.1007/s12079-012-0168-0
104)    Wagholikar, K.B., Sundararajan, V., Deshpande, A.W. (2012). Modeling Paradigms for Medical Diagnostic Decision Support: A Survey and Future Directions. Journal of Medical Systems, 36 (5), 3029-3049. Google Scholar Citations: 71, WoS Citations: 38, ISSN(print/online): 0148-5598/1573-689X, URL/DOI: http://dx.doi.org/10.1007/s10916-011-9780-4
105)    Kolhi, S., Kolaskar, A.S. (2012). Categorization of metabolome in bacterial systems. Bioinformation, 8 (7), 309-315. Google Scholar Citations: 1, ISSN(print/online): 0973-8894/0973-2063, URL/DOI: http://dx.doi.org/10.6026/97320630008309
106)    Banerji, A., Ghosh, I. (2011). Fractal symmetry of protein interior: what have we learned?. Cellular and Molecular Life Sciences, 68 (16), 2711-2737. Google Scholar Citations: 40, WoS Citations: 24, ISSN(print/online): 1420-682X/1420-9071, URL/DOI: http://dx.doi.org/10.1007/s00018-011-0722-6
107)    Singh, P.P., Banerji, A. (2011). Case for an RNA–prion world: a hypothesis based on conformational diversity. Journal of Biological Physics, 37 (2), 185-188. Google Scholar Citations: 4, WoS Citations: 1, ISSN(print/online): 0092-0606/1573-0689, URL/DOI: http://dx.doi.org/10.1007/s10867-011-9219-7
108)    Banerji, A., Ghosh, I. (2011). Mathematical criteria to observe mesoscopic emergence of protein biochemical properties. Journal of Mathematical Chemistry, 49 (3), 643-665. Google Scholar Citations: 8, WoS Citations: 3, ISSN(print/online): 0259-9791/1572-8897, URL/DOI: http://dx.doi.org/10.1007/s10910-010-9760-9
109)    Kolaskar, A.S., Kolhi, S. (2011). Pune University Metabolic Pathway Engineering (PuMPE) Resource. Journal of Emerging Trends in Computing and Information Sciences, 2 (7), 325-331. Google Scholar Citations: 2, ISSN(print/online): 2079-8407/2218-6301, URL/DOI: http://www.cisjournal.org/journalofcomputing/archive/vol2no7/vol2no7_4.pdf
  

Publications Before 2011


110)    Kulkarni, A.P., Mittal, S.P., Devasagayam, T.P.A., Pal, J.K. (2010). Hsp90 mediates activation of the heme regulated eIF-2 kinase during oxidative stress. Indian Journal of Biochemistry and Biophysics, 47 (2), 67-74. Google Scholar Citations: 10, WoS Citations: 8, ISSN(print/online): 0301-1208/0975-0959, URL/DOI: http://nopr.niscair.res.in/bitstream/123456789/8272/1/IJBB%2047%282%29%2067-74.pdf
111)    Dey, S., Jejurikar, S., Bhattacharya, S.K., Banerji, A., Adhi, K.P., Dharmadhikari, C.V. (2010). Electrical characterization of zinc oxide/aluminum nitride thin film precursor field effect transistor structures: A conducting atomic force microscopy and density functional theoretical study. Journal of Applied Physics, 108 (9), 94510-94519. Google Scholar Citations: 1, ISSN(print/online): 0021-8979/1089-7550, URL/DOI: http://dx.doi.org/10.1063/1.3471815
112)    Kulkarni-Kale, U., Sawant, S., Chavan, V. (2010). Bioinformatics education in India. Briefings in Bioinformatics, 11 (6), 616-625. Google Scholar Citations: 13, WoS Citations: 7, ISSN(print/online): 1467-5463/1477-4054, URL/DOI: http://dx.doi.org/10.1093/bib/bbq027
113)    Joshi, M., Ebalunode, J.O., Briggs, J.M. (2009). Computational insights into the interaction of the anthrax lethal factor with the N-terminal region of its substrates. Proteins: Structure, Function and Bioinformatics, 75 (2), 323-335. Google Scholar Citations: 10, WoS Citations: 9, ISSN(print/online): 0887-3585/1097-0134, URL/DOI: http://dx.doi.org/10.1002/prot.22241
114)    Kulkarni, A.P., Mittal, S.P., Devasagayam, T.P., Pal, J.K. (2009). Oxidative stress perturbs cell proliferation in human K562 cells by modulating protein synthesis and cell cycle. Free Radical Research, 43 (11), 1090-1100. Google Scholar Citations: 15, WoS Citations: 10, ISSN(print/online): 1071-5762/1029-2470, URL/DOI: http://dx.doi.org/10.1080/10715760903179673
115)    Kulkarni, A.P., Pal, J.K., Devasagayam, T.P.A. (2008). Radiation and free radical exposure and regulation of protein synthesis by the heme-regulated eukaryotic initiation factor 2a kinase. BARC Newsletter, 297, 80-87. Google Scholar Citations: 3, ISSN(print/online): 0976-2108, URL/DOI: http://barc.gov.in/publications/nl/2008/20081010.pdf
116)    Hosseini, A., Hosseini, A., Ranade, S.H., Ghosh, I., Khandekar, P. (2008). Simple sequence repeats in different genome sequences of Shigella and comparison with high GC and AT-rich genomes: Full Length Research Paper. DNA Sequence, 19 (3), 167-176. Google Scholar Citations: 3, WoS Citations: 3, ISSN(print/online): 1042-5179/1029-2365, URL/DOI: http://dx.doi.org/10.1080/10425170701461730
117)    Lad, R.K., Desai, N.G., Christian, R.A., Deshpande, A.W. (2008). Fuzzy modeling for environmental pollution potential ranking of industries. Environmental Progress, 27 (1), 84-90. Google Scholar Citations: 5, WoS Citations: 5, ISSN(print/online): 0278-4491/1547-5921, URL/DOI: http://dx.doi.org/10.1002/ep.10251
118)    Wagholikar, K.B., Deshpande, A.W. (2008). Fuzzy relation based modeling for medical diagnostic decision support: Case studies. International Journal of Knowledge- Based and Intelligent Engineering Systems, 12 (5-6), 319-326. Google Scholar Citations: 15, WoS Citations: 13, ISSN(print/online): 1327-2314/1875-8827, URL/DOI: http://dx.doi.org/10.3233/KES-2008-125-602
119)    Ghate, A.D., Bhagwat, B.U., Bhosle, S.G., Gadepalli, S.M., Kulkarni-Kale, U.D. (2007). Characterization of antibody-binding sites on proteins: development of a knowledgebase and its applications in improving epitope prediction. Protein and Peptide Letters, 14 (6), 531-535. Google Scholar Citations: 16, WoS Citations: 10, ISSN(print/online): 0929-8665 /1875-5305 , URL/DOI: http://dx.doi.org/10.2174/092986607780989921
120)    Kulkarni-Kale, U., Ojha, J., Manjari, G.S., Deobagkar, D.D., Mallya, A.D., Dhere, R.M., Kapre, S.V. (2007). Mapping antigenic diversity and strain specificity of mumps virus: a bioinformatics approach. Virology, 359 (2), 436-446. Google Scholar Citations: 35, WoS Citations: 23, ISSN(print/online): 0042-6822/1096-0341, URL/DOI: http://dx.doi.org/10.1016/j.virol.2006.09.040
121)    Kumar, A., Ghosh, I. (2007). Mapping Selectivity and Specificity of Active Site of Plasmepsins from Plasmodium falciparum Using Molecular Interaction Field Approach. Protein and Peptide Letters, 14 (6), 569-574. Google Scholar Citations: 6, WoS Citations: 6, ISSN(print/online): 0929-8665 /1875-5305 , URL/DOI: http://dx.doi.org/10.2174/092986607780989877
122)    Gaur, R.K. (2007). Helicase: Mystery of progression. Molecular Biology Reports, 34 (3), 161-164. Google Scholar Citations: 6, ISSN(print/online): 0301-4851/1573-4978 , URL/DOI: http://dx.doi.org/10.1007/s11033-006-9029-3
123)    Greenbaum, J.A., Andersen, P.H., Blythe, M., Bui, H.H., Cachau, R.E., Crowe, J., Davies, M., Kolaskar, A.S., Lund, O., Morrison, S., Mumey, B. (2007). Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. Journal of Molecular Recognition, 20 (2), 75-82. Google Scholar Citations: 205, WoS Citations: 128, ISSN(print/online): 0952-3499/1099-1352, URL/DOI: http://dx.doi.org/10.1002/jmr.815
124)    Kulkarni-Kale, U., Bhosle, S.G., Manjari, G.S., Joshi, M., Bansode, S., Kolaskar, A.S. (2006). Curation of viral genomes: challenges, applications and the way forward. BMC Bioinformatics, 7 (5), 1-21. Google Scholar Citations: 9, WoS Citations: 5, ISSN(print/online): 1471-2105, URL/DOI: http://dx.doi.org/10.1186/1471-2105-7-S5-S12
125)    Baladhye, V.B., Kamble, S.P., Fawade, M.M. (2006). Phenobarbitone Induced Changes in Yeast Mitochondrial Proteome. Journal of Bioinfolet, 3 (2), 123-125.
126)    Salokhe, S., Sarkar, A., Kulkarni, A., Mukherjee, S., Pal, J.K. (2006). Flufenoxuron, an acylurea insect growth regulator, alters development of Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae) by modulating levels of chitin, soluble protein content, and HSP70 and p34cdc2 in the larval tissues. Pesticide Biochemistry and Physiology, 85 (2), 84-90. Google Scholar Citations: 19, WoS Citations: 10, ISSN(print/online): 0048-3575/1095-9939, URL/DOI: http://dx.doi.org/10.1016/j.pestbp.2005.10.006
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