Department Details

Bioinformatics Centre

1)    Joshi, R., Gaikwad, H., Soge, B., Alshammari, A., Albekairi, N.A., Kabra, A., Yashwante, U., Kolte, B., Lokhande, P., Meshram, R.J. (2025). Exploring pyrazolines as potential inhibitors of NSP3-macrodomain of SARS-CoV-2: synthesis and in silico analysis. Scientific Reports, 15 (1), 767. ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/s41598-024-81711-5
2)    Singh, S., Ghosh, P., Sharma, S., Bhargava, S., Kumar, A.R. (2024). Tetrahydropalmatine from medicinal plants activates human glucokinase to regulate glucose homeostasis. Biotechnology and Applied Biochemistry, 71 (2), 295-313. ISSN(print/online): 0885-4513/1470-8744, URL/DOI: http://dx.doi.org/10.1002/bab.2541
3)    Lokhande, K.B., Pawar, S.V., Madkaiker, S., Shrivastava, A., Venkateswara, S.K., Nawani, N., Wani, M., Ghosh, P.D., Singh, A. (2024). Screening of potential phytomolecules against MurG as drug target in nosocomial pathogen Pseudomonas aeruginosa: perceptions from computational campaign. Journal of Biomolecular Structure and Dynamics, 42 (1), 1-14. ISSN(print/online): 0739-1102/1538-0254, URL/DOI: http://dx.doi.org/10.1080/07391102.2023.2194005
4)    Kamble, S.C., Ghosh, P.D. (2024). Defining omics-based biomarker signatures of metabolic dysfunction-associated steatotic liver disease (MASLD): In vitro studies. Current Opinion in Biomedical Engineering, 30, 100534. ISSN(print/online): 2468-4511, URL/DOI: http://dx.doi.org/10.1016/j.cobme.2024.100534
5)    Nikte, S.V., Joshi, M., Sengupta, D. (2024). State-dependent dynamics of extramembrane domains in the β2-adrenergic receptor. Proteins: Structure, Function and Bioinformatics, 92 (3), 1-12. ISSN(print/online): 0887-3585/1097-0134, URL/DOI: http://dx.doi.org/10.1002/prot.26613
6)    Rajan, B. R. S., Joshi, M., Tillu, G. (2024). Unlocking ancient wisdom with technology – A special issue on Ayurveda and technology. Journal of Ayurveda and Integrative Medicine, 15 (3), 101020. ISSN(print/online): 0975-9476/0976-2809, URL/DOI: http://dx.doi.org/10.1016/j.jaim.2024.101020
7)    Bose, G.S., Jindal, S., Landage, K.G., Jindal, A., Mahale, M.P., Kulkarni, A.P., Mittal, S. (2024). SMAR1 and p53-regulated lncRNA RP11-431M3.1 enhances HIF1A translation via miR-138 in colorectal cancer cells under oxidative stress. FEBS Journal, 291 (21), 4696-4713. ISSN(print/online): 1742-464X/1742-4658, URL/DOI: http://dx.doi.org/10.1111/febs.17253
8)    Bose, G.S., Kalakoti, G., Kulkarni, A.P., Mittal, S. (2024). AP-1/C-FOS and AP-1/FRA2 differentially regulate early and late adipogenic differentiation of mesenchymal stem cells. Journal of Cellular Biochemistry, 125 (10), ISSN(print/online): 0730-2312/1097-4644, URL/DOI: http://dx.doi.org/10.1002/jcb.30543
9)    Gire, D., Inamdar, S., Acharya, J., Sadawarte, S., Kulkarni, A., Ghaskadbi, S. (2024). Dynamic changes in the gene expression during adipogenesis in hMSCs. Genetic Resources and Crop Evolution, 34, 101860. ISSN(print/online): 0925-9864/1573-5109, URL/DOI: http://dx.doi.org/10.1016/j.genrep.2023.101860
10)    Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2024). iCEED: Integrated customized extraction of enzyme data. Journal of Bioinformatics and Computational Biology, 22 (2), 2450005. ISSN(print/online): 0219-7200/1757-6334, URL/DOI: http://dx.doi.org/10.1142/s0219720024500057
11)    Limaye, S., Shelke, A., Kale, M.M., Kulkarni-Kale, U., Kuchipudi, S.V. (2024). IDV Typer: An Automated Tool for Lineage Typing of Influenza D Viruses Based on Return Time Distribution. Viruses, 16 (3), 373. ISSN(print/online): 1999-4915, URL/DOI: http://dx.doi.org/10.3390/v16030373
12)    Limaye, S., Lohar, T., Dube, H., Ramasamy, S., Kale, M., Kulkarni-Kale, U., Kuchipudi, S.V., (2024). Rapid evolution leads to extensive genetic diversification of cattle flu Influenza D virus. Communications Biology, 7, 1276. ISSN(print/online): 2399-3642, URL/DOI: http://dx.doi.org/10.1038/s42003-024-06954-4
13)    Ballabh, D., Shaikh, S., More, R.A., Meshram, R.J. (2024). Dynamics, mechanistic and energetic evaluation of thiazole-thiadiazole compounds in flavin dependent thymidylate synthase of Mycobacterium tuberculosis. International Journal of Biological Macromolecules, 289, 138839. ISSN(print/online): 0141-8130/1879-0003, URL/DOI: http://dx.doi.org/10.1016/j.ijbiomac.2024.138839
14)    Hublikar, M., Kadu, V., Edake, N., Raut, D., Shirame, S., Z. Ahmed, M., Makam, P., Ahmad, M.S., Meshram, R.J., Bhosale, R. (2024). Design, Synthesis, Anti-Cancer, Anti-inflammatory and In Silico Studies of 3-Substituted-2-Oxindole Derivatives. Chemistry and Biodiversity, 21 (11), e202400844. ISSN(print/online): 1612-1872/1612-1880, URL/DOI: http://dx.doi.org/10.1002/cbdv.202400844
15)    Dahiwade, M., Vyawahare, N., Garade, P., Marathe, A., Meshram, R., Suryawanshi, M., Palake, A., Kodam, K., Ottoor, D. (2024). Biological activity and biomolecule interaction of pyridyl thiazole derivative and its copper complex. Journal of Molecular Liquids, 404, 124936. ISSN(print/online): 0167-7322/1873-3166, URL/DOI: http://dx.doi.org/10.1016/j.molliq.2024.124936
16)    Shaikh, S.A., Labhade, S.R., Kale, R.R., Pachorkar, P.Y., Meshram, R.J., Jain, K.S., Labhade, H.S., Bhanushali, D.D., More, R.A., Nerkar, C.K., Chobe, S.S. (2024). Thiadiazole-thiazole derivatives as potent anti-tubercular agents: Synthesis, biological evaluation, and In silico docking studies. European Journal of Medicinal Chemistry Reports, 12, 100183. ISSN(print/online): 2772-4174, URL/DOI: http://dx.doi.org/10.1016/j.ejmcr.2024.100183
17)    Vane, V., Mokal, R., Yashwante, U., Meshram, R. J., Jadhava, S. (2024). Synthesis and In-Vitro/Silico Evaluation of Fluorinated Chalcones. Oriental Journal of Chemistry, 40 (4), 1077-1086. ISSN(print/online): 0970-020X/2231-5039, URL/DOI: http://dx.doi.org/10.13005/ojc/400419
18)    Shaikh, S.A., Pachorkar, P.Y., Meshram, R.J., Boraste, D.R., More, R.A., Chobe, S.S., Ballabh, D., Wakchaure, S.N., Labhade, S.R., Kale, R.R., Labhade, H.S. (2024). Synthesis, Biological and Molecular Docking Studies of Thiazole-Thiadiazole derivatives as potential Anti-Tuberculosis Agents. Chemistry and Biodiversity, 21 (6), e202400496. ISSN(print/online): 1612-1872/1612-1880, URL/DOI: http://dx.doi.org/10.1002/cbdv.202400496
19)    Meshram, R., Kolte, B., Gacche, R. (2024). Reverse vaccinology approach for identification of epitopes from E1 protein as peptide vaccine against HCV: A proof of concept. Vaccine, 42 (24), 1-13. ISSN(print/online): 0264-410X/1873-2518, URL/DOI: http://dx.doi.org/10.1016/j.vaccine.2024.07.007
20)    Jani, V., Sonavane, U., Sawant, S. (2024). Structural insights into the activation mechanism of phosphoinositide 3-kinase alpha. Computational Biology and Chemistry, 108, 1-16. ISSN(print/online): 1476-9271/1476-928X, URL/DOI: http://dx.doi.org/10.1016/j.compbiolchem.2023.107994
21)    Saxena, A., Saxena, S. (2023). Pancreatic Cancer Data Classification with Quantum Machine Learning. Journal of Quantum Computing, 5 (1), 1-13. ISSN(print/online): 2579-0137/2579-0145, URL/DOI: http://dx.doi.org/10.32604/jqc.2023.044555
22)    Chand, K., Barman, M.K., Ghosh, P., Mitra, D. (2023). DNAJB8 facilitates autophagic-lysosomal degradation of viral Vif protein and restricts HIV-1 virion infectivity by rescuing APOBEC3G expression in host cells. FASEB Journal, 37 (3), 1-23. ISSN(print/online): 0892-6638/1530-6860, URL/DOI: http://dx.doi.org/10.1096/fj.202201738R
23)    Doiphode, S., Lokhande, K.B., Ghosh, P., Swamy, K.V., Nagar, S. (2023). Dual inhibition of cyclooxygenase-2 (COX-2) and 5-lipoxygenase (5-LOX) by resveratrol derivatives in cancer therapy: in silico approach. Journal of Biomolecular Structure and Dynamics, 41 (17), 8571-8586. Google Scholar Citations: 1, ISSN(print/online): 0739-1102/1538-0254, URL/DOI: http://dx.doi.org/10.1080/07391102.2022.2135599
24)    Ballav, S., Lokhande, K.B., Yadav, R.S., Ghosh, P.D., Swamy, K.V., Basu, S. (2023). Exploring binding mode assessment of novel kaempferol, resveratrol, and quercetin derivatives with PPAR-α as potent drug candidates against canc. Molecular Diversity, 27 (6), 2867 - 2885. ISSN(print/online): 1381-1991/1573-501X, URL/DOI: http://dx.doi.org/10.1007/s11030-022-10587-2
25)    Lokhande, K.B., Pawar, S.V., Madkaiker, S., Nawani, N., Venkateswara, S.K., Ghosh, P. (2023). High throughput virtual screening and molecular dynamics simulation analysis of phytomolecules against BfmR of Acinetobacter baumannii: anti-virulent drug development campaign. Journal of Biomolecular Structure and Dynamics, 41 (7), 2698-2712. WoS Citations: 5, ISSN(print/online): 0739-1102/1538-0254, URL/DOI: http://dx.doi.org/10.1080/07391102.2022.2038271
26)    Joshi, M.S., Lin, S.J., Vona, B., Lau, T., Huang, K., Zaki, M.S., Aldeen, H.S., Karimiani, E.G., Rocca, C., Noureldeen, M.M., Saad, A.K., Petree, C....ed. (2023). Evaluating the association of biallelic OGDHL variants with significant phenotypic heterogeneity. . Genome Medicine, 15 (1), 102. ISSN(print/online): 1756-994X, URL/DOI: http://dx.doi.org/10.1186/s13073-023-01258-4
27)    Gedam, P.A., Khandagale, K., Shirsat, D., Thangasamy, A., Kulkarni, O., Kulkarni, A., Barvkar, V., Mahajan, V., Gupta, A.J., Bhagat, K.P., Khade, Y.P. (2023). Elucidating the molecular responses to waterlogging stress in onion (Allium cepa L.) leaf by comparative transcriptome profiling. Frontiers in Plant Science, 14, 1150909. ISSN(print/online): 1664-462X, URL/DOI: http://dx.doi.org/10.3389/fpls.2023.1150909
28)    Sawant, P., Kulkarni, A.P., Lavania, M. (2023). Metatranscriptomic assessment of diarrhoeic faeces reveals diverse RNA viruses in rotavirus group A infected piglets and calves from India. Frontiers in Cellular and Infection Microbiology, 13, 1258660. ISSN(print/online): 2235-2988, URL/DOI: http://dx.doi.org/10.3389/fcimb.2023.1258660
29)    Yadav, S., Raazi, Z., Shivaraj, S.M., Somani, D., Prashant, R., Kulkarni, A., Kumar, R., Biradar, S., Desai, S., Kadoo, N. (2023). Whole Genome Sequencing and Comparative Genomics of Indian Isolates of Wheat Spot Blotch Pathogen Bipolaris sorokiniana Reveals Expansion of Pathogenicity Gene Clusters . Pathogens, 12 (1), 1-20. ISSN(print/online): 2076-0817, URL/DOI: http://dx.doi.org/10.3390/pathogens12010001
30)    Vaidya, S.R., Kumbhar, N.S., Andhare, G.K., Pawar, N., Walimbe, A.M., Kinikar, M., Kasibhatla, S.M., Kulkarni-Kale, U. (2023). Neutralizing Antibody Response to Genotypically Diverse Measles Viruses in Clinically Suspected Measles Cases . Viruses, 15 (11), 2243. ISSN(print/online): 1999-4915, URL/DOI: http://dx.doi.org/10.3390/v15112243
31)    Lodha, K., Wavhal, D., Bhujbal, N., Mazire, P., Bhujbal, S., Korde, A., Bagul, K., Roy, A., Meshram, R., Shinde, V. (2023). Synthesis and biological evaluation of 9-aryl-1,8-dioxo-octahydroxanthene derivatives as antileishmanial agents. Results in Chemistry, 5, 100943. ISSN(print/online): 2211-7156, URL/DOI: http://dx.doi.org/10.1016/j.rechem.2023.100943
32)    Patil, A.M., Lagad, P.M., Soge, B., Meshram, R., Lokhande, M.N., Lokhande, P.D. (2023). Ammonium chloride mediated synthesis of 2-aryl-phthalazinone from O-formyl benzoic acid and in silico applications. ARKIVOC, 2023 (7), 1-11. ISSN(print/online): 1551-7004/1551-7012, URL/DOI: http://dx.doi.org/10.24820/ark.5550190.p011.972
33)    Kamble, R.P., Ghosh, P., Kulkarni, A.A. (2022). Identification of α-amylase inhibitory compounds from leaves of Careya arborea Roxb. and in silico docking studies. South African Journal of Botany, 151, 493-503. ISSN(print/online): 0254-6299/1727-9321, URL/DOI: http://dx.doi.org/10.1016/j.sajb.2022.05.018
34)    Joshi, S., Ghosh, P., Barage, S., Basu, B., Deobagkar, D.D. (2022). Genome-wide lone strand adenine methylation in Deinococcus radiodurans R1: Regulation of gene expression through DR0643-dependent adenine methylation. Microbiological Research, 257, 126964. ISSN(print/online): 0944-5013/1618-0623, URL/DOI: http://dx.doi.org/10.1016/j.micres.2022.126964
35)    Lokhande, K.B., Ghosh, P., Nagar, S., Venkateswara Swamy, K. (2022). Novel B, C-ring truncated deguelin derivatives reveals as potential inhibitors of cyclin D1 and cyclin E using molecular docking and molecular dynamic simulation. Molecular Diversity, 26 (4), 2295–2309. WoS Citations: 3, ISSN(print/online): 1381-1991/1573-501X, URL/DOI: http://dx.doi.org/10.1007/s11030-021-10334-z
36)    Lokhande, K.B., Banerjee, T., Swamy, K.V., Ghosh, P., Deshpande, M. (2022). An in silico scientific basis for LL-37 as a therapeutic for Covid-19. Proteins: Structure, Function and Bioinformatics, 90 (5), 1029-1043. Google Scholar Citations: 1, WoS Citations: 6, ISSN(print/online): 0887-3585/1097-0134, URL/DOI: http://dx.doi.org/10.1002/prot.26198
37)    Paithankar, H., Tarang, G.S., Parvez, F., Marathe, A., Joshi, M., Chugh, J. (2022). Inherent conformational plasticity in dsRBDs enables interaction with topologically distinct RNAs. Biophysical Journal, 121 (6), 1038-1055. WoS Citations: 1, ISSN(print/online): 0006-3495/1542-0086, URL/DOI: http://dx.doi.org/10.1016/j.bpj.2022.02.005
38)    Khandagale, K., Roylawar, P., Kulkarni, O., Khambalkar, P., Ade, A., Kulkarni, A., Singh, M., Gawande, S. (2022). Comparative Transcriptome Analysis of Onion in Response to Infection by Alternaria porri (Ellis) Cifferi. Frontiers in Plant Science, 13, 857306-857306. ISSN(print/online): 1664-462X, URL/DOI: http://dx.doi.org/10.3389/fpls.2022.857306
39)    Mane, A., Kasibhatla, S.M., Vidhate, P., Saxena, V., Patil, S., Rao, A., Nirmalkar, A., Kulkarni-Kale, U., Panda, S (2022). Phylogenetic Analysis of Spread of Hepatitis C Virus Identified during HIV Outbreak Investigation, Unnao, India. Emerging infectious diseases, 28 (4), 725–733. Google Scholar Citations: 1, ISSN(print/online): 1080-6040/1080-6059, URL/DOI: http://dx.doi.org/10.3201/eid2804.211845
40)    Hufsky, F., Abecasis, A., Agudelo R. P., Bletsa, M., Brown, K., Claus, C., Deinhardt E. S., Deng, L., Friedel, C.C., Gismondi, M.I., Kostaki, E.G., Kühnert, D., Kulkarni-Kale, U., Metzner, K.J., Meyer, I.M., Miozzi, L., Nishimura, L., Paraskevopoulou, S., Pérez C. A., Rahlff, J., Thomson, E., Tumescheit, C., van der Hoek, L., Van Espen, L., Vandamme, A. M., Zaheri, M., Zuckerman, N., Marz, M. (2022). Women in the European Virus Bioinformatics Center. Viruses, 14 (7), 1522. ISSN(print/online): 1999-4915, URL/DOI: http://dx.doi.org/10.3390/v14071522
41)    Mane, A., Limaye, S., Patil, L., Kulkarni-Kale, U. (2022). Genetic variability in minor capsid protein (L2 gene) of human papillomavirus type 16 among Indian women. Medical Microbiology and Immunology, 211, 153-160. ISSN(print/online): 0300-8584/1432-1831, URL/DOI: http://dx.doi.org/10.1007/s00430-022-00739-4
42)    Mane, A., Limaye, S., Patil, L., Kulkarni-Kale, U. (2022). Genetic variations in the long control region of human papillomavirus type 16 isolates from India: implications for cervical carcinogenesis. Journal of Medical Microbiology, 71 (1), 001475. WoS Citations: 2, ISSN(print/online): 0022-2615/1473-5644, URL/DOI: http://dx.doi.org/10.1099/jmm.0.001475
43)    Lodha, K.K., Wavhal, D.S., Bhalekar, S.B., Meshram, R.J., Shinde, V.S. (2022). Exploring New Tetrahydrothienopyridine Derivatives as Platelet Agglutination Inhibitors: Synthesis, Biological Evaluation and In Silico Study. ChemistrySelect, 7 (2), 202103428. ISSN(print/online): 2365-6549, URL/DOI: http://dx.doi.org/10.1002/slct.202103428
44)    More, N.A., Jadhao, N.L., Meshram, R.J., Tambe, P., Salve, R.A., Sabane, J.K., Sawant, S.N., Gajbhiye, V., Gajbhiye, J.M. (2022). Novel 3-fluoro-4-morpholinoaniline derivatives: Synthesis and assessment of anti-cancer activity in breast cancer cells. Journal of Molecular Structure, 1253, 132127. ISSN(print/online): 0022-2860/1872-8014, URL/DOI: http://dx.doi.org/10.1016/j.molstruc.2021.132127
45)    Meshram, R.J., Kathwate, G.H., Gacche, R.N. (2022). Progress, evolving therapeutic/diagnostic approaches, and challenges in the management of hepatitis C virus infections. Archives of Virology, 167, 717-736. WoS Citations: 1, ISSN(print/online): 0304-8608/1432-8798, URL/DOI: http://dx.doi.org/10.1007/s00705-022-05375-0
46)    Ghosh, P., Hajra, A. (2021). Fluorination of 2 H-Indazoles Using N-Fluorobenzenesulfonimide. The Journal of Organic Chemistry, 86 (15), 10883–10888. Google Scholar Citations: 6, ISSN(print/online): 0022-3263/1520-6904, URL/DOI: http://dx.doi.org/10.1021/acs.joc.1c01253
47)    Joshi, S., Ujaoney, A.K., Ghosh, P., Deobagkar, D.D., Basu, B. (2021). N6-methyladenine and epigenetic immunity of Deinococcus radiodurans. Research in Microbiology, 172 (1), 103789. WoS Citations: 3, ISSN(print/online): 0923-2508/1769-7123, URL/DOI: http://dx.doi.org/10.1016/j.resmic.2020.10.004
48)    Roy, A., Behera, S., Kumari, B., Mazire, P.H., Mandal, A., Purkait, B., Ghosh, P., Das, P., Das, P. (2021). The HIV − 1 protease inhibitor Amprenavir targets Leishmania donovani topoisomerase I and induces oxidative stress-mediated programmed cell death. Parasitology International, 82, 102287. WoS Citations: 2, ISSN(print/online): 1383-5769/1873-0329, URL/DOI: http://dx.doi.org/10.1016/j.parint.2021.102287
49)    Nikte, S.V., Sonar, K., Tandale, A., Joshi, M., Sengupta, D. (2021). Loss of a water-mediated network results in reduced agonist affinity in a β2-adrenergic receptor clinical variant. Biochimica et Biophysica Acta- Proteins and Proteomics, 1869 (4), 140605. WoS Citations: 3, ISSN(print/online): 1570-9639/1878-1454, URL/DOI: http://dx.doi.org/10.1016/j.bbapap.2021.140605
50)    Gujar, N., Nikte, S.V., Joshi, R.S., Joshi, M. (2021). Molecular Characterization of the β2-like Octopamine Receptor of Helicoverpa armigera. Journal of Membrane Biology, 254, 311-319. WoS Citations: 2, ISSN(print/online): 0022-2631/1432-1424, URL/DOI: http://dx.doi.org/10.1007/s00232-021-00172-3
51)    Kulkarni, A.S., Ramesh, R., Walia, S., Sayyad, S.I., Gathalkar, G.B., Balamkundu, S., Joshi, M., Sen, A., Reddy, D.S. (2021). Identification of a Novel Series of Potent Organosilicon Mosquito Repellents. ACS Omega, 6 (46), 31236-31243. ISSN(print/online): 2470-1343, URL/DOI: http://dx.doi.org/10.1021/acsomega.1c04961
52)    Kharche, S., Joshi, M., Chattopadhyay, A., Sengupta, D. (2021). Conformational plasticity and dynamic interactions of the N-terminal domain of the chemokine receptor CXCR1. PLoS Computational Biology, 17 (5), e1008593. Google Scholar Citations: 2, WoS Citations: 6, ISSN(print/online): 1553-7358/1553-734X, URL/DOI: http://dx.doi.org/10.1371/journal.pcbi.1008593
53)    Borse, S., Joshi, M., Saggam, A., Bhat, V., Walia, S., Marathe, A., Sagar, S., Chavan-Gautam, P., Girme, A., Hingorani, L., Tillu, G. (2021). Ayurveda botanicals in COVID-19 management: An in silico multi-target approach. PloS One, 16 (6), e0248479. Google Scholar Citations: 9, WoS Citations: 21, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0248479
54)    Joshi, M., Lin, S.J., Vona, B., Barbalho, P.G., Kaiyrzhanov, R., Maroofian, R., Petree, C., Severino, M., Stanley, V., Varshney, P., Bahena, P., Alzahrani, F. (2021). Biallelic variants in KARS1 are associated with neurodevelopmental disorders and hearing loss recapitulated by the knockout zebrafish. Genetics in Medicine, 23 (10), 1933-1943. WoS Citations: 4, ISSN(print/online): 1098-3600/1530-0366, URL/DOI: http://dx.doi.org/10.1038/s41436-021-01239-1
55)    Alai, S., Gujar, N., Joshi, M., Gautam, M., Gairola, S. (2021). Pan-India novel coronavirus SARS-CoV-2 genomics and global diversity analysis in spike protein. Heliyon, 7 (3), e06564. WoS Citations: 11, ISSN(print/online): 2405-8440, URL/DOI: http://dx.doi.org/10.1016/j.heliyon.2021.e06564
56)    Dar, M.S., Dholakia, B.B., Kulkarni, A.P., Oak, P.S., Shanmugam, D., Gupta, V.S., Giri, A.P. (2021). Influence of domestication on specialized metabolic pathways in fruit crops. Planta, 253 (2), 1-15. WoS Citations: 2, ISSN(print/online): 0032-0935/1432-2048, URL/DOI: http://dx.doi.org/10.1007/s00425-020-03554-4
57)    Kolhe, N., Kulkarni, A., Zinjarde, S., Acharya, C. (2021). Transcriptome Response of the Tropical Marine Yeast Yarrowia lipolytica on Exposure to Uranium. Current Microbiology, 78, 2033-2043. WoS Citations: 4, ISSN(print/online): 0343-8651/1432-0991, URL/DOI: http://dx.doi.org/10.1007/s00284-021-02459-z
58)    Vaidya, S.R., Kasibhatla, S.M., Kamble, M.B., Munivenkatappa, A., Kumbhar, N.S., Jayaswamy, M.M., Ramtirthkar, M.R., Kale, M.M., Kulkarni-Kale, U. (2021). Genetic and antigenic characterization of wild type rubella viruses isolated from India. Vaccine, 39 (6), ISSN(print/online): 0264-410X/1873-2518, URL/DOI: http://dx.doi.org/10.1016/j.vaccine.2020.12.063
59)    Gokavi, J., Sadawarte, S., Shelke, A., Kulkarni-Kale, U., Thakar, M., Saxena, V. (2021). Inhibition of miR-155 Promotes TGF-β Mediated Suppression of HIV Release in the Cervical Epithelial Cells . Viruses, 13 (11), 2266. WoS Citations: 2, ISSN(print/online): 1999-4915, URL/DOI: http://dx.doi.org/10.3390/v13112266
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120)    Mathai, J., Mittal, S.P., Alam, A., Ranade, P., Mogare, D., Patel, S., Saxena, S., Ghorai, S., Kulkarni, A.P., Chattopadhyay, S. (2016). SMAR1 binds to T (C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster. Scientific Reports, 6, 33779. WoS Citations: 12, ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/srep33779
121)    Kulkarni, A.P., Mittal, S.P. (2016). Sequence data mining in search of hookworm (Necator americanus) microRNAs. Gene, 590 (2), 317-323. Google Scholar Citations: 1, WoS Citations: 3, ISSN(print/online): 0378-1119/1879-0038, URL/DOI: http://dx.doi.org/10.1016/j.gene.2016.05.039
122)    Tidke, P.R., Maurya, D.K., Kulkarni, A.P., Devasagayam, T., Pal, J.K. (2016). Radiation-induced oxidative stress regulates protein synthesis by modulating the expression of heme-regulated eIF2α kinase in human K562 cells. Indian Journal of Biochemistry and Biophysics, 53 (3-4), 95-103. Google Scholar Citations: 3, WoS Citations: 2, ISSN(print/online): 0301-1208/0975-0959, URL/DOI: http://nopr.niscpr.res.in/handle/123456789/42492
123)    Mane, A., Vidhate, P., Kusro, C., Waman, V., Saxena, V., Kulkarni‐Kale, U., Risbud, A. (2016). Molecular mechanisms associated with Fluconazole resistance in clinical Candida albicans isolates from India. Mycoses, 59 (2), 93-100. Google Scholar Citations: 25, WoS Citations: 23, ISSN(print/online): 1439-0507, URL/DOI: http://dx.doi.org/10.1111/myc.12439
124)    Kolekar, P., Pataskar, A., Kulkarni-Kale, U., Pal, J., Kulkarni, A. (2016). IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES). Scientific Reports, 6, 27436. Google Scholar Citations: 14, WoS Citations: 30, ISSN(print/online): 2045-2322, URL/DOI: http://dx.doi.org/10.1038/srep27436
125)    Sandhu, V., Lothe, I.B., Labori, K.J., Skrede, M.L., Hamfjord, J., Dalsgaard, A.M., Buanes, T., Dube, G., Kale, M.M., Sawant, S., Kulkarni-Kale, U. (2016). Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. Molecular Oncology, 10 (2), 303-316. Google Scholar Citations: 7, WoS Citations: 12, ISSN(print/online): 1574-7891/1878-0261, URL/DOI: http://dx.doi.org/10.1016/j.molonc.2015.10.011
126)    Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2016). Erratum to: BioDB extractor: customized data extraction system for commonly used bioinformatics databases. BioData Mining, 9 (1), ISSN(print/online): 1756-0381, URL/DOI: http://dx.doi.org/10.1186/s13040-016-0081-9
127)    Waman, V.P., Kolekar, P., Ramtirthkar, M.R., Kale, M.M., Kulkarni-Kale, U. (2016). Analysis of genotype diversity and evolution of Dengue virus serotype 2 using complete genomes. PeerJ, 4, e2326. Google Scholar Citations: 45, WoS Citations: 36, ISSN(print/online): 2167-8359, URL/DOI: http://dx.doi.org/10.7717/peerj.2326
128)    Waman, V.P., Kasibhatla, S.M., Kale, M.M., Kulkarni-Kale, U. (2016). Population genomics of dengue virus serotype 4: insights into genetic structure and evolution. Archives of Virology, 161 (8), 2133-2148. Google Scholar Citations: 9, WoS Citations: 9, ISSN(print/online): 0304-8608/1432-8798, URL/DOI: http://dx.doi.org/10.1007/s00705-016-2886-8
129)    Kolekar, P.S., Waman, V.P., Kale, M.M., Kulkarni-Kale, U. (2016). RV-Typer: A Web Server for Typing of Rhinoviruses Using Alignment-Free Approach. PloS One, 11 (2), e0149350. Google Scholar Citations: 2, WoS Citations: 3, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0149350
130)    Gaikwad, P.S., Panicker, L., Mohole, M., Sawant, S., Mukhopadhyaya, R., Nath, B.B. (2016). Differential sensitivity of Chironomus and human hemoglobin to gamma radiation. Biochemical and Biophysical Research Communications, 476 (4), 371-378. Google Scholar Citations: 2, WoS Citations: 1, ISSN(print/online): 0006-291X/1090-2104, URL/DOI: http://dx.doi.org/10.1016/j.bbrc.2016.05.129
131)    Gautam, A.K., Panse, Y., Ghosh, P., Reza, M.J., Mullick, J., Sahu, A. (2015). Mutational analysis of Kaposica reveals that bridging of MG2 and CUB domains of target protein is crucial for the cofactor activity of RCA proteins. Proceedings of the National Academy of Sciences of the United States of America, 112 (41), 12794-12799. Google Scholar Citations: 6, WoS Citations: 11, ISSN(print/online): 1091-6490, URL/DOI: http://dx.doi.org/10.1073/pnas.1506449112
132)    Karbhal, R., Sawant, S., Kulkarni-Kale, U. (2015). BioDB extractor: customized data extraction system for commonly used bioinformatics databases. BioData Mining, 8 (1), 1. Google Scholar Citations: 2, WoS Citations: 3, ISSN(print/online): 1756-0381, URL/DOI: http://dx.doi.org/10.1186/s13040-015-0067-z
133)    Banerjee, A., Benjamin, R., Balakrishnan, K., Ghosh, P., Banerjee, S. (2014). Human protein Staufen-2 promotes HIV-1 proliferation by positively regulating RNA export activity of viral protein Rev. Retrovirology, 11 (1), 1. Google Scholar Citations: 10, WoS Citations: 17, ISSN(print/online): 1742-4690, URL/DOI: http://dx.doi.org/10.1186/1742-4690-11-18
134)    Shahane, G., Parsania, C., Sengupta, D., Joshi, M. (2014). Molecular insights into the dynamics of pharmacogenetically important N-terminal variants of the human β2-adrenergic receptor. PLoS Computational Biology, 10 (12), e1004006. Google Scholar Citations: 12, WoS Citations: 22, ISSN(print/online): 1553-7358/1553-734X, URL/DOI: http://dx.doi.org/10.1371/journal.pcbi.1004006
135)    Kumbhar, V., Kharche, S., Charla, S., Baladhye, V.B., Kulkarni, A.P., Joshi, M. (2014). Unraveling the function of novel yeast proteins. Journal of Proteins and Proteomics, 5 (3), 112. ISSN(print/online): 0975-8151/2524-4663.
136)    Mittal, S.P., Kulkarni, A.P., Mathai, J., Chattopadhyay, S., Pal, J.K. (2014). Dose-dependent differential response of mammalian cells to cytoplasmic stress is mediated through the heme-regulated eIF2α kinase. International Journal of Biochemistry and Cell Biology, 54, 186-197. Google Scholar Citations: 6, WoS Citations: 7, ISSN(print/online): 1357-2725/1878-5875, URL/DOI: http://dx.doi.org/10.1016/j.biocel.2014.07.016
137)    Waman, V.P., Kolekar, P.S., Kale, M.M., Kulkarni-Kale, U. (2014). Population Structure and Evolution of Rhinoviruses. PloS One, 9 (2), e88981. Google Scholar Citations: 26, WoS Citations: 24, ISSN(print/online): 1932-6203, URL/DOI: http://dx.doi.org/10.1371/journal.pone.0088981
138)    Kolekar, P., Hake, N., Kale, M., Kulkarni-Kale, U. (2014). WNV Typer: A server for genotyping of West Nile viruses using an alignment-free method based on a return time distribution. Journal of Virological Methods, 198, 41-55. Google Scholar Citations: 3, WoS Citations: 3, ISSN(print/online): 0166-0934/1879-0984, URL/DOI: http://dx.doi.org/10.1016/j.jviromet.2013.12.012
139)    Joshi, M., Kulkarni, A., Pal, J.K. (2013). Small molecule modulators of eukaryotic initiation factor 2α kinases, the key regulators of protein synthesis. Biochimie, 95 (11), 1980-1990. Google Scholar Citations: 28, WoS Citations: 30, ISSN(print/online): 0300-9084/1638-6183, URL/DOI: http://dx.doi.org/10.1016/j.biochi.2013.07.030
140)    Mittal, S.P., Mathai, J., Kulkarni, A.P., Pal, J.K., Chattopadhyay, S. (2013). miR-320a regulates erythroid differentiation through MAR binding protein SMAR1. International Journal of Biochemistry and Cell Biology, 45 (11), 2519-2529. Google Scholar Citations: 11, WoS Citations: 17, ISSN(print/online): 1357-2725/1878-5875, URL/DOI: http://dx.doi.org/10.1016/j.biocel.2013.07.006
141)    Banerji, A., Navare, C. (2013). Fractal nature of protein surface roughness: a note on quantification of change of surface roughness in active sites, before and after binding. Journal of Molecular Recognition, 26 (5), 201-214. Google Scholar Citations: 8, WoS Citations: 10, ISSN(print/online): 0952-3499/1099-1352, URL/DOI: http://dx.doi.org/10.1002/jmr.2264
142)    Banerji, A. (2013). An attempt to construct a (general) mathematical framework to model biological “context-dependence”. Systems and Synthetic Biology, 7 (4), 221-227. Google Scholar Citations: 4, ISSN(print/online): 1872-5325/1872-5333, URL/DOI: http://dx.doi.org/10.1007/s11693-013-9122-6
143)    Yadav, A., Jayaraman, V.K., Kale, M., Kulkarni-Kale, U. (2013). Phylogenetic Clustering of Protein Sequences Using Recurrence Quantification Analysis. Advanced Science Letters, 19 (5), 1336-1339. ISSN(print/online): 1936-6612/1936-7317, URL/DOI: http://dx.doi.org/10.1166/asl.2013.4499
144)    Ponnusamy, S., Zinjarde, S., Bhargava, S., Kulkarni-Kale, U., Sawant, S., Ravikumar, A. (2013). Deciphering the inactivation of human pancreatic α-amylase, an antidiabetic target, by bisdemethoxycurcumin, a small molecule inhibitor, isolated from Curcuma longa. Natural Products Journal, 3 (1), 15-25. Google Scholar Citations: 5, ISSN(print/online): 2210-3155/2210-3163, URL/DOI: http://dx.doi.org/10.2174/2210315511303010005
145)    Balakrishnan, L., Soman, S., Patil, Y.B., Advani, J., Thomas, J.K., Desai, D.V., Kulkarni-Kale, U., Harsha, H.C., Prasad, T.K., Raju, R., Pandey, A. (2013). IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase. Cell Communication and Adhesion, 20 (3-4), 81-86. Google Scholar Citations: 5, WoS Citations: 6, ISSN(print/online): 1541-9061/1543-5180, URL/DOI: http://dx.doi.org/10.3109/15419061.2013.791683
146)    Kolhi, S., Kolaskar, A.S. (2013). Metabolic Network Analysis: Current Status and Way Forward. Current Bioinformatics, 8 (3), 285-292. ISSN(print/online): 1574-8936/2212-392X, URL/DOI: http://dx.doi.org/10.2174/1574893611308030003
147)    Saxena, S. (2012). Using Pig on Hadoop for data analysis in Bioinformatics. International Journal of Advanced Research in Computer Science, 3 (7), 240-245. ISSN(print/online): 0976-5697, URL/DOI: https://search.proquest.com/openview/61bbed5d31088693069a25a6c9e71cd4/1?pq-origsite=gscholar&cbl=1606379
148)    Mallipeddi, P.L., Joshi, M.S., Briggs, J.M. (2012). Pharmacophore-based virtual screening to aid in the identification of unknown protein function. Chemical Biology and Drug Design, 80 (6), 828-842. Google Scholar Citations: 9, WoS Citations: 9, ISSN(print/online): 1747-0277/1747-0285, URL/DOI: http://dx.doi.org/10.1111/j.1747-0285.2012.01408.x
149)    Banerji, A., Magarkar, A. (2012). How happy is your web browsing? A model to quantify satisfaction of an Internet user searching for desired information. Physica A: Statistical Mechanics and its Applications, 391 (17), 4215-4224. Google Scholar Citations: 2, WoS Citations: 3, ISSN(print/online): 0378-4371/1873-2119, URL/DOI: http://dx.doi.org/10.1016/j.physa.2012.02.002
150)    Kulkarni-Kale, U., Waman, V., Raskar, S., Mehta, S., Saxena, S. (2012). Genome to Vaccinome: Role of Bioinformatics, Immunoinformatics & Comparative Genomics. Current Bioinformatics, 7 (4), 454-466. Google Scholar Citations: 2, WoS Citations: 1, ISSN(print/online): 1574-8936/2212-392X, URL/DOI: http://dx.doi.org/10.2174/157489312803900910
151)    Kolekar, P., Kale, M., Kulkarni-Kale, U. (2012). Alignment-free distance measure based on return time distribution for sequence analysis: Applications to clustering, molecular phylogeny and subtyping. Molecular Phylogenetics and Evolution, 65 (2), 510-522. Google Scholar Citations: 36, WoS Citations: 36, ISSN(print/online): 1055-7903/1095-9513, URL/DOI: http://dx.doi.org/10.1016/j.ympev.2012.07.003
152)    Radhakrishnan, A., Raju, R., Tuladhar, N., Subbannayya, T., Thomas, J.K., Goel, R., Telikicherla, D., Palapetta, S.M., Rahiman, B.A., Venkatesh, D.D., Kulkarni-Kale, U., Harsha, H.C., Mathur, P.P., Prasad, T.S.K., Pandey, A., Shemanko, C., Chatterjee, A. (2012). A pathway map of prolactin signaling. Journal of Cell Communication and Signaling, 6 (3), 169-173. Google Scholar Citations: 22, WoS Citations: 40, ISSN(print/online): 1873-9601/1873-961X, URL/DOI: http://dx.doi.org/10.1007/s12079-012-0168-0
153)    Wagholikar, K.B., Sundararajan, V., Deshpande, A.W. (2012). Modeling Paradigms for Medical Diagnostic Decision Support: A Survey and Future Directions. Journal of Medical Systems, 36 (5), 3029-3049. Google Scholar Citations: 71, WoS Citations: 57, ISSN(print/online): 0148-5598/1573-689X, URL/DOI: http://dx.doi.org/10.1007/s10916-011-9780-4
154)    Kolhi, S., Kolaskar, A.S. (2012). Categorization of metabolome in bacterial systems. Bioinformation, 8 (7), 309-315. Google Scholar Citations: 1, ISSN(print/online): 0973-8894/0973-2063, URL/DOI: http://dx.doi.org/10.6026/97320630008309
155)    Banerji, A., Ghosh, I. (2011). Fractal symmetry of protein interior: what have we learned?. Cellular and Molecular Life Sciences, 68 (16), 2711-2737. Google Scholar Citations: 40, WoS Citations: 30, ISSN(print/online): 1420-682X/1420-9071, URL/DOI: http://dx.doi.org/10.1007/s00018-011-0722-6
156)    Singh, P.P., Banerji, A. (2011). Case for an RNA–prion world: a hypothesis based on conformational diversity. Journal of Biological Physics, 37 (2), 185-188. Google Scholar Citations: 4, WoS Citations: 1, ISSN(print/online): 0092-0606/1573-0689, URL/DOI: http://dx.doi.org/10.1007/s10867-011-9219-7
157)    Kolekar, P.S., Kale, M.M., Kulkarni-Kale, U. (2011). Genotyping of Mumps Viruses Based on the SH gene: Development of a Server using Alignment-free and alignment based methods. Immunome Research, 7 (3), 1-7. Google Scholar Citations: 11, ISSN(print/online): 1745-7580, URL/DOI: https://www.longdom.org/archive/imr-volume-7-issue-3-year-2011.html
158)    Banerji, A., Ghosh, I. (2011). Mathematical criteria to observe mesoscopic emergence of protein biochemical properties. Journal of Mathematical Chemistry, 49 (3), 643-665. Google Scholar Citations: 8, WoS Citations: 3, ISSN(print/online): 0259-9791/1572-8897, URL/DOI: http://dx.doi.org/10.1007/s10910-010-9760-9
160)    Kolaskar, A.S., Kolhi, S. (2011). Pune University Metabolic Pathway Engineering (PuMPE) Resource. Journal of Emerging Trends in Computing and Information Sciences, 2 (7), 325-331. Google Scholar Citations: 2, ISSN(print/online): 2079-8407/2218-6301, URL/DOI: http://www.cisjournal.org/journalofcomputing/archive/vol2no7/vol2no7_4.pdf
  

Publications Before 2011


161)    Kulkarni, A.P., Mittal, S.P., Devasagayam, T.P.A., Pal, J.K. (2010). Hsp90 mediates activation of the heme regulated eIF-2 kinase during oxidative stress. Indian Journal of Biochemistry and Biophysics, 47 (2), 67-74. Google Scholar Citations: 10, WoS Citations: 8, ISSN(print/online): 0301-1208/0975-0959, URL/DOI: http://nopr.niscair.res.in/bitstream/123456789/8272/1/IJBB%2047%282%29%2067-74.pdf
162)    Dey, S., Jejurikar, S., Bhattacharya, S.K., Banerji, A., Adhi, K.P., Dharmadhikari, C.V. (2010). Electrical characterization of zinc oxide/aluminum nitride thin film precursor field effect transistor structures: A conducting atomic force microscopy and density functional theoretical study. Journal of Applied Physics, 108 (9), 94510-94519. Google Scholar Citations: 1, WoS Citations: 1, ISSN(print/online): 0021-8979/1089-7550, URL/DOI: http://dx.doi.org/10.1063/1.3471815
163)    Kulkarni-Kale, U., Sawant, S., Chavan, V. (2010). Bioinformatics education in India. Briefings in Bioinformatics, 11 (6), 616-625. Google Scholar Citations: 13, WoS Citations: 12, ISSN(print/online): 1467-5463/1477-4054, URL/DOI: http://dx.doi.org/10.1093/bib/bbq027
164)    Joshi, M., Ebalunode, J.O., Briggs, J.M. (2009). Computational insights into the interaction of the anthrax lethal factor with the N-terminal region of its substrates. Proteins: Structure, Function and Bioinformatics, 75 (2), 323-335. Google Scholar Citations: 10, WoS Citations: 9, ISSN(print/online): 0887-3585/1097-0134, URL/DOI: http://dx.doi.org/10.1002/prot.22241
165)    Kulkarni, A.P., Mittal, S.P., Devasagayam, T.P., Pal, J.K. (2009). Oxidative stress perturbs cell proliferation in human K562 cells by modulating protein synthesis and cell cycle. Free Radical Research, 43 (11), 1090-1100. Google Scholar Citations: 15, WoS Citations: 13, ISSN(print/online): 1071-5762/1029-2470, URL/DOI: http://dx.doi.org/10.1080/10715760903179673
166)    Kulkarni, A.P., Pal, J.K., Devasagayam, T.P.A. (2008). Radiation and free radical exposure and regulation of protein synthesis by the heme-regulated eukaryotic initiation factor 2a kinase. BARC Newsletter, 297, 80-87. Google Scholar Citations: 3, ISSN(print/online): 0976-2108, URL/DOI: http://barc.gov.in/publications/nl/2008/20081010.pdf
167)    Hosseini, A., Hosseini, A., Ranade, S.H., Ghosh, I., Khandekar, P. (2008). Simple sequence repeats in different genome sequences of Shigella and comparison with high GC and AT-rich genomes: Full Length Research Paper. DNA Sequence, 19 (3), 167-176. Google Scholar Citations: 3, WoS Citations: 3, ISSN(print/online): 1042-5179/1029-2365, URL/DOI: http://dx.doi.org/10.1080/10425170701461730
168)    Lad, R.K., Desai, N.G., Christian, R.A., Deshpande, A.W. (2008). Fuzzy modeling for environmental pollution potential ranking of industries. Environmental Progress, 27 (1), 84-90. Google Scholar Citations: 5, WoS Citations: 8, ISSN(print/online): 0278-4491/1547-5921, URL/DOI: http://dx.doi.org/10.1002/ep.10251
169)    Wagholikar, K.B., Deshpande, A.W. (2008). Fuzzy relation based modeling for medical diagnostic decision support: Case studies. International Journal of Knowledge- Based and Intelligent Engineering Systems, 12 (5-6), 319-326. Google Scholar Citations: 15, WoS Citations: 13, ISSN(print/online): 1327-2314/1875-8827, URL/DOI: http://dx.doi.org/10.3233/KES-2008-125-602
170)    Kulkarni-Kale, U., Ojha, J., Manjari, G.S., Deobagkar, D.D., Mallya, A.D., Dhere, R.M., Kapre, S.V. (2007). Mapping antigenic diversity and strain specificity of mumps virus: a bioinformatics approach. Virology, 359 (2), 436-446. Google Scholar Citations: 35, WoS Citations: 28, ISSN(print/online): 0042-6822/1096-0341, URL/DOI: http://dx.doi.org/10.1016/j.virol.2006.09.040
171)    Ghate, A.D., Bhagwat, B.U., Bhosle, S.G., Gadepalli, S.M., Kulkarni-Kale, U. (2007). Characterization of antibody-binding sites on proteins: development of a knowledgebase and its applications in improving epitope prediction. Protein and Peptide Letters, 14 (6), 531-535. Google Scholar Citations: 16, WoS Citations: 12, ISSN(print/online): 0929-8665 /1875-5305 , URL/DOI: http://dx.doi.org/10.2174/092986607780989921
172)    Kumar, A., Ghosh, I. (2007). Mapping Selectivity and Specificity of Active Site of Plasmepsins from Plasmodium falciparum Using Molecular Interaction Field Approach. Protein and Peptide Letters, 14 (6), 569-574. Google Scholar Citations: 6, WoS Citations: 6, ISSN(print/online): 0929-8665 /1875-5305 , URL/DOI: http://dx.doi.org/10.2174/092986607780989877
173)    Gaur, R.K. (2007). Helicase: Mystery of progression. Molecular Biology Reports, 34 (3), 161-164. Google Scholar Citations: 6, ISSN(print/online): 0301-4851/1573-4978, URL/DOI: http://dx.doi.org/10.1007/s11033-006-9029-3
174)    Greenbaum, J.A., Andersen, P.H., Blythe, M., Bui, H.H., Cachau, R.E., Crowe, J., Davies, M., Kolaskar, A.S., Lund, O., Morrison, S., Mumey, B. (2007). Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. Journal of Molecular Recognition, 20 (2), 75-82. Google Scholar Citations: 205, WoS Citations: 166, ISSN(print/online): 0952-3499/1099-1352, URL/DOI: http://dx.doi.org/10.1002/jmr.815
175)    Kulkarni-Kale, U., Bhosle, S.G., Manjari, G.S., Joshi, M., Bansode, S., Kolaskar, A.S. (2006). Curation of viral genomes: challenges, applications and the way forward. BMC Bioinformatics, 7 (5), 1-21. Google Scholar Citations: 9, WoS Citations: 7, ISSN(print/online): 1471-2105, URL/DOI: http://dx.doi.org/10.1186/1471-2105-7-S5-S12
176)    Baladhye, V.B., Kamble, S.P., Fawade, M.M. (2006). Phenobarbitone Induced Changes in Yeast Mitochondrial Proteome. Journal of Bioinfolet, 3 (2), 123-125.
177)    Salokhe, S., Sarkar, A., Kulkarni, A., Mukherjee, S., Pal, J.K. (2006). Flufenoxuron, an acylurea insect growth regulator, alters development of Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae) by modulating levels of chitin, soluble protein content, and HSP70 and p34cdc2 in the larval tissues. Pesticide Biochemistry and Physiology, 85 (2), 84-90. Google Scholar Citations: 19, WoS Citations: 12, ISSN(print/online): 0048-3575/1095-9939, URL/DOI: http://dx.doi.org/10.1016/j.pestbp.2005.10.006
178)    Singh, V.K., Ghosh, I. (2006). Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets. Theoretical Biology and Medical Modelling, 3 (1), 27. Google Scholar Citations: 65, WoS Citations: 46, ISSN(print/online): 1742-4682, URL/DOI: http://dx.doi.org/10.1186/1742-4682-3-27
179)    Prakash, O., Ghosh, I. (2006). Developing an antituberculosis compounds database and data mining in the search of a motif responsible for the activity of a diverse class of antituberculosis agents. Journal of Chemical Information and Modeling, 46 (1), 17-23. Google Scholar Citations: 23, WoS Citations: 23, ISSN(print/online): 1549-9596/1549-960X, URL/DOI: http://dx.doi.org/10.1021/ci050115s
180)    Ghosh, I. (2006). Target based high throughput screening and lead designing in pharmaceutical drug industry. Indian Journal of Chemistry - Section A Inorganic, Physical, Theoretical and Analytical Chemistry, 45 (1), 163-173. Google Scholar Citations: 1, ISSN(print/online): 0376-4710/0975-0975, URL/DOI: http://nopr.niscair.res.in/bitstream/123456789/19962/1/IJCA%2045A%281%29%20163-173.pdf
181)    Sarkar, A., Kulkarni, A., Chattopadhyay, S., Mogare, D., Sharma, K.K., Singh, K., Pal, J.K. (2005). Lead-induced upregulation of the heme-regulated eukaryotic initiation factor 2α kinase is compromised by hemin in human K562 cells. Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression, 1732 (1-3), 15-22. Google Scholar Citations: 11, WoS Citations: 8, ISSN(print/online): 0167-4781, URL/DOI: http://dx.doi.org/10.1016/j.bbaexp.2005.12.003
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183)    Sarkar, D., Ghosh, I., Datta, S. (2004). Biochemical characterization of Plasmodium falciparum hypoxanthine-guanine-xanthine phosphorybosyltransferase: role of histidine residue in substrate selectivity. Molecular and Biochemical Parasitology, 137 (2), 267-276. Google Scholar Citations: 12, WoS Citations: 8, ISSN(print/online): 0166-6851/1872-9428, URL/DOI: http://dx.doi.org/10.1016/j.molbiopara.2004.05.014
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